RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TNFRSF18Q9Y5U5 241 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 GNRH2O43555 120 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 TRBV12-3P01733 135 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 COX8AP10176 69 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 COL6A5A8TX70 2615 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 NBEAL1Q6ZS30 2694 aa8.98□□□□□ -0.97
NPHP4-204ENST00000460696 SUMO2P61956 95 aaKnown RBP8.97□□□□□ -0.97
NPHP4-204ENST00000460696 KIR3DS1Q14943 382 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 LGALS9BQ3B8N2 356 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 SAMD13Q5VXD3 122 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 LGALS9CQ6DKI2 356 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 C11orf71Q6IPW1 123 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 UNQ9165/PRO28630Q6UXU0 137 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 Q8N8P6 123 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 ANKRD39Q53RE8 183 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 MRPL35Q9NZE8 188 aaKnown RBP8.97□□□□□ -0.97
NPHP4-204ENST00000460696 SMPXQ9UHP9 88 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 IGHV3-64A0A075B6Q5 118 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 A0A1W2PPR1 153 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 ZNF815PA8K554 130 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 CD5LO43866 347 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 DUSP14O95147 198 aaKnown RBP8.97□□□□□ -0.97
NPHP4-204ENST00000460696 IGLV2-11P01706 119 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 DEFB112Q30KQ8 113 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 CCDC140Q96MF4 163 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 MRPL16Q9NX20 251 aaKnown RBP8.97□□□□□ -0.97
NPHP4-204ENST00000460696 KLK9Q9UKQ9 250 aa8.97□□□□□ -0.97
NPHP4-204ENST00000460696 ASPMQ8IZT6 3477 aa8.96□□□□□ -0.97
NPHP4-204ENST00000460696 PCP2Q8IVA1 136 aa8.96□□□□□ -0.98
NPHP4-204ENST00000460696 UBR5O95071 2799 aaPredicted RBP8.96□□□□□ -0.98
NPHP4-204ENST00000460696 IGHV7-4-1A0A0J9YVY3 117 aa8.96□□□□□ -0.98
NPHP4-204ENST00000460696 BVES-AS1Q5T3Y7 98 aa8.96□□□□□ -0.98
NPHP4-204ENST00000460696 TEX29Q8N6K0 151 aa8.96□□□□□ -0.98
NPHP4-204ENST00000460696 C10orf105Q8TEF2 133 aa8.96□□□□□ -0.98
NPHP4-204ENST00000460696 AJUBAQ96IF1 538 aa8.96□□□□□ -0.98
NPHP4-204ENST00000460696 H7C1H1 209 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 LYRM7Q5U5X0 104 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 C2orf66Q6UXQ4 117 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 FSTL3O95633 263 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 DEFB131AP59861 70 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 ZNF876PQ49A33 203 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 DCHS1Q96JQ0 3298 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 ITPR2Q14571 2701 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 ZNF48Q96MX3 618 aaPredicted RBP8.95□□□□□ -0.98
NPHP4-204ENST00000460696 VCX2Q9H322 139 aa8.95□□□□□ -0.98
NPHP4-204ENST00000460696 KNCNA6PVL3 124 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 LINC01545Q5VT33 79 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 TTTY13Q9BZ97 58 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 SAMD5Q5TGI4 173 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 CHAC1Q9BUX1 264 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 SMIM2Q9BVW6 85 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 GEMIN7Q9H840 131 aaKnown RBP8.94□□□□□ -0.98
NPHP4-204ENST00000460696 PEMTQ9UBM1 199 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 IGKV3OR2-268A0A0C4DH90 116 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 COTL1Q14019 142 aa8.94□□□□□ -0.98
NPHP4-204ENST00000460696 TRBV6-1A0A0K0K1D8 114 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 MRGPRG-AS1Q2M3A8 158 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 C16orf54Q6UWD8 224 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 MRAP2Q96G30 205 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 IGKV3D-20A0A0C4DH25 116 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 RBAKDNA6NC62 111 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 VCYO14598 125 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 PLNP26678 52 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 PAPPA-AS1Q5QFB9 102 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 SMAD5-AS1Q9Y6J3 95 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 LINC01559Q495D7 138 aa8.93□□□□□ -0.98
NPHP4-204ENST00000460696 DMDP11532 3685 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 GAGE12BA1L429 117 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 GATA3P23771 443 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 PAX2Q02962 417 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 EBI3Q14213 229 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 KLHL30-AS1Q8NEE0 82 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 ZNF479Q96JC4 524 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 MEGF9Q9H1U4 602 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 CTRLP40313 264 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 RPL39LQ96EH5 51 aaKnown RBP8.92□□□□□ -0.98
NPHP4-204ENST00000460696 RRN3P1Q2M238 152 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 TCTEX1D4Q5JR98 221 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 TP53TG1Q9Y2A0 90 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 TEX15Q9BXT5 2789 aa8.92□□□□□ -0.98
NPHP4-204ENST00000460696 DEFB136Q30KP8 78 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 ITPR1Q14643 2758 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 TRGV11A0A075B6L2 103 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 IGF1P05019 195 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 PSMG3-AS1Q96PY0 264 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 SDHAF1A6NFY7 115 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 STHQ8IWL8 128 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 UBE2E2Q96LR5 201 aa8.91□□□□□ -0.98
NPHP4-204ENST00000460696 MRPL53Q96EL3 112 aaKnown RBP8.9□□□□□ -0.98
NPHP4-204ENST00000460696 A0A1B0GWB2 263 aa8.9□□□□□ -0.98
NPHP4-204ENST00000460696 HOXA3O43365 443 aaPredicted RBP8.9□□□□□ -0.98
NPHP4-204ENST00000460696 Q8N6K4 173 aa8.9□□□□□ -0.98
NPHP4-204ENST00000460696 ZFAND3Q9H8U3 227 aa8.9□□□□□ -0.98
NPHP4-204ENST00000460696 SCRT2Q9NQ03 307 aa8.9□□□□□ -0.98
NPHP4-204ENST00000460696 CCL25O15444 150 aa8.9□□□□□ -0.99
NPHP4-204ENST00000460696 CD28P10747 220 aa8.9□□□□□ -0.99
NPHP4-204ENST00000460696 GAGE1Q13065 139 aa8.9□□□□□ -0.99
NPHP4-204ENST00000460696 DEFB121Q5J5C9 76 aa8.9□□□□□ -0.99
NPHP4-204ENST00000460696 IGHG2P01859 326 aa8.89□□□□□ -0.99
NPHP4-204ENST00000460696 HIST2H2BDQ6DRA6 164 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms