RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 C16orf54Q6UWD8 224 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 ZNRF2Q8NHG8 242 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 CHD3Q12873 2000 aaKnown RBP11.46□□□□□ -0.57
PTPRU-205ENST00000460170 S100A7L2Q5SY68 101 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 PCP2Q8IVA1 136 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 AJUBAQ96IF1 538 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 A0A1W2PPM0 123 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 PRAC2D3DTV9 90 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 HOXD3P31249 432 aaPredicted RBP11.46□□□□□ -0.57
PTPRU-205ENST00000460170 DPH3Q96FX2 82 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 FANCD2OSQ96PS1 177 aa11.46□□□□□ -0.57
PTPRU-205ENST00000460170 TRBV20-1A0A075B6N2 111 aa11.46□□□□□ -0.58
PTPRU-205ENST00000460170 K7EP13 123 aa11.46□□□□□ -0.58
PTPRU-205ENST00000460170 GATD1Q8NB37 220 aa11.46□□□□□ -0.58
PTPRU-205ENST00000460170 ZFAND6Q6FIF0 208 aa11.45□□□□□ -0.58
PTPRU-205ENST00000460170 IGHV3-38A0A0C4DH36 116 aa11.45□□□□□ -0.58
PTPRU-205ENST00000460170 TRBV6-1A0A0K0K1D8 114 aa11.45□□□□□ -0.58
PTPRU-205ENST00000460170 C19orf71A6NCJ1 209 aa11.45□□□□□ -0.58
PTPRU-205ENST00000460170 LGALS1P09382 135 aaKnown RBP11.45□□□□□ -0.58
PTPRU-205ENST00000460170 TRAV8-3A0A0A6YYJ7 113 aa11.45□□□□□ -0.58
PTPRU-205ENST00000460170 J3QQQ9 107 aa11.45□□□□□ -0.58
PTPRU-205ENST00000460170 C10orf105Q8TEF2 133 aa11.45□□□□□ -0.58
PTPRU-205ENST00000460170 ZNF48Q96MX3 618 aaPredicted RBP11.45□□□□□ -0.58
PTPRU-205ENST00000460170 ETDBQ3ZM63 59 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 DEFB125Q8N687 156 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 JPT2Q9H910 190 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 NDUFA12Q9UI09 145 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 CFHR3Q02985 330 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 Q6ZVH6 145 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 IGLV2-8P01709 118 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 SS18Q15532 418 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 ANKRD39Q53RE8 183 aa11.44□□□□□ -0.58
PTPRU-205ENST00000460170 TRBV25-1A0A075B6N4 114 aa11.43□□□□□ -0.58
PTPRU-205ENST00000460170 SIRPDQ9H106 197 aa11.43□□□□□ -0.58
PTPRU-205ENST00000460170 K7ERJ3 54 aa11.43□□□□□ -0.58
PTPRU-205ENST00000460170 DAZAP2Q15038 168 aaPredicted RBP11.43□□□□□ -0.58
PTPRU-205ENST00000460170 ATRXP46100 2492 aa11.43□□□□□ -0.58
PTPRU-205ENST00000460170 PTPRSQ13332 1948 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 CEP192Q8TEP8 1941 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 F8W1H4 67 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 GAGE7O76087 117 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 GAGE12FP0CL80 117 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 GAGE12GP0CL81 117 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 GAGE12IP0CL82 117 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 RHOHQ15669 191 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 CTRLP40313 264 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 RPL39LQ96EH5 51 aaKnown RBP11.42□□□□□ -0.58
PTPRU-205ENST00000460170 PRO1854Q9UHT4 67 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 C9orf47Q6ZRZ4 202 aa11.42□□□□□ -0.58
PTPRU-205ENST00000460170 CITED1Q99966 193 aa11.41□□□□□ -0.58
PTPRU-205ENST00000460170 TMEM243Q9BU79 118 aa11.41□□□□□ -0.58
PTPRU-205ENST00000460170 C12orf74Q32Q52 190 aa11.41□□□□□ -0.58
PTPRU-205ENST00000460170 SCRT2Q9NQ03 307 aa11.4□□□□□ -0.58
PTPRU-205ENST00000460170 OVOL2Q9BRP0 275 aa11.4□□□□□ -0.58
PTPRU-205ENST00000460170 PIEZO2Q9H5I5 2752 aa11.4□□□□□ -0.58
PTPRU-205ENST00000460170 VWC2LB2RUY7 222 aa11.4□□□□□ -0.58
PTPRU-205ENST00000460170 YPEL4Q96NS1 127 aa11.4□□□□□ -0.58
PTPRU-205ENST00000460170 A0A1B0GXF2 115 aa11.4□□□□□ -0.58
PTPRU-205ENST00000460170 DEFB136Q30KP8 78 aa11.4□□□□□ -0.58
PTPRU-205ENST00000460170 PLXNB1O43157 2135 aa11.4□□□□□ -0.59
PTPRU-205ENST00000460170 LINC00322Q6ZN03 302 aaPredicted RBP11.39□□□□□ -0.59
PTPRU-205ENST00000460170 H3BMG7 143 aa11.39□□□□□ -0.59
PTPRU-205ENST00000460170 FGF6P10767 208 aa11.39□□□□□ -0.59
PTPRU-205ENST00000460170 TNRC6AQ8NDV7 1962 aaKnown RBP11.38□□□□□ -0.59
PTPRU-205ENST00000460170 MLST8Q9BVC4 326 aa11.38□□□□□ -0.59
PTPRU-205ENST00000460170 WNK1Q9H4A3 2382 aa11.38□□□□□ -0.59
PTPRU-205ENST00000460170 ODF3BA8MYP8 253 aa11.38□□□□□ -0.59
PTPRU-205ENST00000460170 SPINK8P0C7L1 97 aa11.38□□□□□ -0.59
PTPRU-205ENST00000460170 SUMO4Q6EEV6 95 aa11.38□□□□□ -0.59
PTPRU-205ENST00000460170 IGHG2P01859 326 aa11.38□□□□□ -0.59
PTPRU-205ENST00000460170 RNASE13Q5GAN3 156 aaKnown RBP11.38□□□□□ -0.59
PTPRU-205ENST00000460170 AMTNQ6UX39 209 aa11.38□□□□□ -0.59
PTPRU-205ENST00000460170 CENPFP49454 3210 aa11.37□□□□□ -0.59
PTPRU-205ENST00000460170 PPDPFLQ8WWR9 84 aa11.37□□□□□ -0.59
PTPRU-205ENST00000460170 K7EMT4 169 aa11.37□□□□□ -0.59
PTPRU-205ENST00000460170 U3KQE9 123 aa11.37□□□□□ -0.59
PTPRU-205ENST00000460170 HERVK_113P63121 156 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 GAGE6Q13070 117 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 LRP4O75096 1905 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 SLURP1P55000 103 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 BOD1L2Q8IYS8 172 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 TSSC4Q9Y5U2 329 aaPredicted RBP11.36□□□□□ -0.59
PTPRU-205ENST00000460170 TLN1Q9Y490 2541 aaKnown RBP11.36□□□□□ -0.59
PTPRU-205ENST00000460170 C2orf70A6NJV1 201 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 FSTL3O95633 263 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 CCL25O15444 150 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 IGF2RP11717 2491 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 MBD6Q96DN6 1003 aa11.36□□□□□ -0.59
PTPRU-205ENST00000460170 ZFP2Q6ZN57 461 aa11.35□□□□□ -0.59
PTPRU-205ENST00000460170 PTPN13Q12923 2485 aa11.35□□□□□ -0.59
PTPRU-205ENST00000460170 CRYGBP07316 175 aa11.35□□□□□ -0.59
PTPRU-205ENST00000460170 GDF5OSQ5U4N7 250 aa11.35□□□□□ -0.59
PTPRU-205ENST00000460170 PFN2P35080 140 aa11.35□□□□□ -0.59
PTPRU-205ENST00000460170 DAD1P61803 113 aa11.35□□□□□ -0.59
PTPRU-205ENST00000460170 LMO4P61968 165 aa11.35□□□□□ -0.59
PTPRU-205ENST00000460170 DEFB113Q30KQ7 82 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 GPHB5Q86YW7 130 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 H3BMM0 161 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 UNQ9165/PRO28630Q6UXU0 137 aa11.34□□□□□ -0.59
PTPRU-205ENST00000460170 UBE2WQ96B02 151 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms