RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 AZU1P20160 251 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 CRIP1P50238 77 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 TCL1AP56279 114 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 C11orf72Q8NBR9 251 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 EDA2RQ9HAV5 297 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 C11orf21Q9P2W6 132 aa6.28□□□□□ -1.4
SYNE1-214ENST00000454018 LYRM9A8MSI8 78 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 B4DEV8 164 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 ORM1P02763 201 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 PRM2P04554 102 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 EMP1P54849 157 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 LINC01551Q86U37 167 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 IL17DQ8TAD2 202 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 OCC1Q8TAD7 63 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 DAZAP1Q96EP5 407 aaKnown RBP6.27□□□□□ -1.41
SYNE1-214ENST00000454018 NAT8Q9UHE5 227 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 TP53TG3Q9ULZ0 132 aa6.27□□□□□ -1.41
SYNE1-214ENST00000454018 TIMM8BQ9Y5J9 83 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-214ENST00000454018 IGKV3D-20A0A0C4DH25 116 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 IGHV3-16A0A0C4DH30 117 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 C19orf71A6NCJ1 209 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 KRBOX1C9JBD0 128 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 K7EN84 100 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 M0R036 132 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 P01737 135 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 CXCL1P09341 107 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 SPART-AS1P0CW21 52 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 ASIPP42127 132 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 DAZ2Q13117 558 aaKnown RBP6.26□□□□□ -1.41
SYNE1-214ENST00000454018 OR5I1Q13606 314 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 TMEM241Q24JQ0 296 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 FAM222AQ5U5X8 452 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 GSN-AS1Q9NRJ2 163 aa6.26□□□□□ -1.41
SYNE1-214ENST00000454018 XKRY2A2RUG3 117 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 S100A4P26447 101 aaKnown RBP6.25□□□□□ -1.41
SYNE1-214ENST00000454018 RPS20P60866 119 aaKnown RBP6.25□□□□□ -1.41
SYNE1-214ENST00000454018 DNLZQ5SXM8 178 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 WDR73Q6P4I2 378 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 FAM231DQ6ZW35 169 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 C11orf45Q8TAV5 145 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 SPXQ9BT56 116 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 NOP10Q9NPE3 64 aaKnown RBP6.25□□□□□ -1.41
SYNE1-214ENST00000454018 CELA1Q9UNI1 258 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 GNRH2O43555 120 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 RNASE3P12724 160 aaKnown RBP6.25□□□□□ -1.41
SYNE1-214ENST00000454018 RPL23P62829 140 aaKnown RBP6.25□□□□□ -1.41
SYNE1-214ENST00000454018 PNRC1Q12796 327 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-214ENST00000454018 ADIRFQ15847 76 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 LGALS9BQ3B8N2 356 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 OR2D3Q8NGH3 330 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 ISOC2Q96AB3 205 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 C9orf85Q96MD7 179 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 TM2D2Q9BX73 214 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 RPP21Q9H633 154 aaKnown RBP6.25□□□□□ -1.41
SYNE1-214ENST00000454018 IL36BQ9NZH7 164 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 MDFICQ9P1T7 246 aa6.25□□□□□ -1.41
SYNE1-214ENST00000454018 TMSB15BA0A087X1C1 80 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 TMEM218A2RU14 115 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 H3BVH4 76 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 M0R2P5 195 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 SPINK4O60575 86 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 ERVFC1-1P60608 527 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 DAD1P61803 113 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 RPL19P84098 196 aaKnown RBP6.24□□□□□ -1.41
SYNE1-214ENST00000454018 LINC00612Q8N6U2 182 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 C15orf54Q8N8G6 183 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 NDUFAF3Q9BU61 184 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 RNASE7Q9H1E1 156 aaKnown RBP6.24□□□□□ -1.41
SYNE1-214ENST00000454018 OSTCQ9NRP0 149 aa6.24□□□□□ -1.41
SYNE1-214ENST00000454018 TRGV1A0A0A0MS02 117 aa6.23□□□□□ -1.41
SYNE1-214ENST00000454018 ADCYAP1P18509 176 aa6.23□□□□□ -1.41
SYNE1-214ENST00000454018 PIK3CD-AS1Q5SR53 167 aa6.23□□□□□ -1.41
SYNE1-214ENST00000454018 Q6ZTI0 123 aa6.23□□□□□ -1.41
SYNE1-214ENST00000454018 SFRP2Q96HF1 295 aa6.23□□□□□ -1.41
SYNE1-214ENST00000454018 C18orf15Q96N68 181 aa6.23□□□□□ -1.41
SYNE1-214ENST00000454018 SEC11CQ9BY50 192 aa6.23□□□□□ -1.41
SYNE1-214ENST00000454018 GRIFINA4D1Z8 144 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 F8W036 122 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 SNAI2O43623 268 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 GATCO43716 136 aaKnown RBP6.22□□□□□ -1.41
SYNE1-214ENST00000454018 OR5AL1P0C617 328 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 DEFB130BP0DP73 79 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 DEFB130AP0DP74 79 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 NANOS2P60321 138 aaKnown RBP6.22□□□□□ -1.41
SYNE1-214ENST00000454018 C12orf74Q32Q52 190 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 RASL10AQ92737 203 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 PTH2Q96A98 100 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 MRPL16Q9NX20 251 aaKnown RBP6.22□□□□□ -1.41
SYNE1-214ENST00000454018 PHLDA3Q9Y5J5 127 aa6.22□□□□□ -1.41
SYNE1-214ENST00000454018 TRGV2A0A075B6R0 118 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 A0A1W2PPQ1 181 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 A8MWL6 223 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 VCYO14598 125 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 GAGE7O76087 117 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 ARMS2P0C7Q2 107 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 IGLC6P0CF74 106 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 GAGE12FP0CL80 117 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 GAGE12GP0CL81 117 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 GAGE12IP0CL82 117 aa6.21□□□□□ -1.42
SYNE1-214ENST00000454018 CTRLP40313 264 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms