RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 A0A087WWC5 75 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 RBAKDNA6NC62 111 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 FAM24AA6NFZ4 105 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 INMT-MINDY4F8WBC2 141 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 H2AFB2P0C5Z0 115 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 SEC11BP0C7V7 166 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 MGST1P10620 155 aaKnown RBP4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 BAXQ07812 192 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 DGAT2L7PQ6IED9 249 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 CYB561D1Q8N8Q1 229 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 PHYHIPLQ96FC7 376 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 ZC2HC1AQ96GY0 325 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 ATP5SQ99766 215 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 SEC22CQ9BRL7 303 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 SDF2L1Q9HCN8 221 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 LENEPQ9Y5L5 61 aa4.92□□□□□ -1.62
LIMCH1-204ENST00000446625 CSN1S1P47710 185 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 CIRBPQ14011 172 aaKnown RBP4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 MIR17HGQ75NE6 70 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 CHAC2Q8WUX2 184 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 ASB13Q8WXK3 278 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 FXYD5Q96DB9 178 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 C1orf43Q9BWL3 253 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 SAMD10Q9BYL1 202 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 UQCC1Q9NVA1 299 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 ALG5Q9Y673 324 aa4.91□□□□□ -1.62
LIMCH1-204ENST00000446625 A0A087WX48 190 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 A0A087WYN8 130 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 TRAV21A0A0B4J279 112 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 IGSF23A1L1A6 192 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 PGPEP1LA6NFU8 196 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 DIRC3C9JPN6 131 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 F6UZH7 168 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 PHOX2AO14813 284 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 EIF3GO75821 320 aaKnown RBP eCLIP4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 FGF7P21781 194 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 RANP62826 216 aaKnown RBP4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 Q0VG73 95 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 ELOBQ15370 118 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 ZNF506Q5JVG8 444 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 WDR73Q6P4I2 378 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 ENHOQ6UWT2 76 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 OR10G9Q8NGN4 311 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 OR2T35Q8NGX2 323 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 THAP6Q8TBB0 222 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 DPH3Q96FX2 82 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 KCNS1Q96KK3 526 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 KIF25-AS1Q9Y6Z4 181 aa4.9□□□□□ -1.63
LIMCH1-204ENST00000446625 HLA-DQA1P01909 254 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 CHTF8P0CG12 524 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 RPL19P84098 196 aaKnown RBP4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 C14orf178Q8N769 122 aaPredicted RBP4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 MITD1Q8WV92 249 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 TMED6Q8WW62 240 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 TVP23CQ96ET8 276 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 C9orf85Q96MD7 179 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 CHCHD7Q9BUK0 85 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 PARLQ9H300 379 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 C11orf21Q9P2W6 132 aa4.89□□□□□ -1.63
LIMCH1-204ENST00000446625 PGPA6NDG6 321 aa4.88□□□□□ -1.63
LIMCH1-204ENST00000446625 ZFP2Q6ZN57 461 aa4.88□□□□□ -1.63
LIMCH1-204ENST00000446625 PTH2Q96A98 100 aa4.88□□□□□ -1.63
LIMCH1-204ENST00000446625 HYLS1Q96M11 299 aa4.88□□□□□ -1.63
LIMCH1-204ENST00000446625 LINC00479Q96M42 142 aa4.88□□□□□ -1.63
LIMCH1-204ENST00000446625 TREM1Q9NP99 234 aa4.88□□□□□ -1.63
LIMCH1-204ENST00000446625 CRPP02741 224 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 FGF8P55075 233 aaPredicted RBP4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 PRR3P79522 188 aaKnown RBP4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 RAB32Q13637 225 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 KCNIP4Q6PIL6 250 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 STX12Q86Y82 276 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 C15orf54Q8N8G6 183 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 TMEM75Q8N9X5 138 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 SPACA4Q8TDM5 124 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 C7orf33Q8WU49 177 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 RNF185Q96GF1 192 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 NPCDR1Q9BY65 106 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 C11orf1Q9H5F2 150 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 PLAC8Q9NZF1 115 aa4.87□□□□□ -1.63
LIMCH1-204ENST00000446625 A8MWV9 139 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 TMEM262E9PQX1 116 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 OR7C2O60412 319 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 SIX6O95475 246 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 RNASE3P12724 160 aaKnown RBP4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 S100A11P31949 105 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 SULT1A1P50225 295 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 ZNF80P51504 273 aaPredicted RBP4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 UBE2L3P68036 154 aaKnown RBP4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 LGALSLQ3ZCW2 172 aaPredicted RBP4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 LRRC37A5PQ49AS3 106 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 UFSP1Q6NVU6 142 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 KRTAP26-1Q6PEX3 210 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 REG3GQ6UW15 175 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 GOLT1AQ6ZVE7 132 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 TMEM252Q8N6L7 170 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 NMES1Q9C002 83 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 MED28Q9H204 178 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 JPT2Q9H910 190 aa4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 LYRM2Q9NU23 88 aaPredicted RBP4.86□□□□□ -1.63
LIMCH1-204ENST00000446625 IGHV3-64A0A075B6Q5 118 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms