RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 ZNF876PQ49A33 203 aa11.22□□□□□ -0.61
USP39-205ENST00000442708 PTH2Q96A98 100 aa11.22□□□□□ -0.61
USP39-205ENST00000442708 FAM210BQ96KR6 192 aa11.22□□□□□ -0.61
USP39-205ENST00000442708 NDUFAF3Q9BU61 184 aa11.22□□□□□ -0.61
USP39-205ENST00000442708 SCRT2Q9NQ03 307 aa11.22□□□□□ -0.61
USP39-205ENST00000442708 GZMBP10144 247 aa11.21□□□□□ -0.61
USP39-205ENST00000442708 RAB14P61106 215 aa11.21□□□□□ -0.61
USP39-205ENST00000442708 FHL2Q14192 279 aa11.21□□□□□ -0.61
USP39-205ENST00000442708 PEA15Q15121 130 aa11.21□□□□□ -0.61
USP39-205ENST00000442708 CLLU1Q5K131 121 aa11.21□□□□□ -0.61
USP39-205ENST00000442708 SMIM7Q9BQ49 75 aa11.21□□□□□ -0.61
USP39-205ENST00000442708 DNAH1Q9P2D7 4330 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 TRAV26-1A0A087WT03 109 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 TRAV4A0A0B4J268 109 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 A0A0J9YY99 117 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 ZNF727A8MUV8 499 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 CXCL1P09341 107 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 TCTAP57738 103 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 DMRTA1Q5VZB9 504 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 NUDT10Q8NFP7 164 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 LINC00476Q8WZB0 136 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 DAZAP1Q96EP5 407 aaKnown RBP11.2□□□□□ -0.62
USP39-205ENST00000442708 NUDT11Q96G61 164 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 VSIG2Q96IQ7 327 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 RNASE7Q9H1E1 156 aaKnown RBP11.2□□□□□ -0.62
USP39-205ENST00000442708 JPT2Q9H910 190 aa11.2□□□□□ -0.62
USP39-205ENST00000442708 RS1O15537 224 aa11.19□□□□□ -0.62
USP39-205ENST00000442708 CFAP126Q5VTH2 177 aa11.19□□□□□ -0.62
USP39-205ENST00000442708 OR2D3Q8NGH3 330 aa11.19□□□□□ -0.62
USP39-205ENST00000442708 MUC21A0A0G2JKD1 596 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 MUC21A0A140T8X8 626 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 SNAI2O43623 268 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 P01737 135 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 LINC01551Q86U37 167 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 OR4C5Q8NGB2 326 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 SSBP4Q9BWG4 385 aaPredicted RBP11.18□□□□□ -0.62
USP39-205ENST00000442708 KRTAP17-1Q9BYP8 105 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 BIN3Q9NQY0 253 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 LY96Q9Y6Y9 160 aa11.18□□□□□ -0.62
USP39-205ENST00000442708 RYR2Q92736 4967 aa11.17□□□□□ -0.62
USP39-205ENST00000442708 LY6G6CO95867 125 aa11.17□□□□□ -0.62
USP39-205ENST00000442708 MED14OSP0DP75 135 aa11.17□□□□□ -0.62
USP39-205ENST00000442708 OR10AG1Q8NH19 301 aa11.17□□□□□ -0.62
USP39-205ENST00000442708 SAMD10Q9BYL1 202 aa11.17□□□□□ -0.62
USP39-205ENST00000442708 SMDT1Q9H4I9 107 aa11.17□□□□□ -0.62
USP39-205ENST00000442708 SACSQ9NZJ4 4579 aa11.17□□□□□ -0.62
USP39-205ENST00000442708 IGHV3-73A0A0B4J1V6 119 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 TRGV4A0A0C4DH28 118 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 M0R381 172 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 NUDT3O95989 172 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 IGLC6P0CF74 106 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 CRYBA4P53673 196 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 PIK3CD-AS1Q5SR53 167 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 LGALS9CQ6DKI2 356 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 C15orf53Q8NAA6 179 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 HHLA3Q9XRX5 114 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 PHLDA3Q9Y5J5 127 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 VPS13DQ5THJ4 4388 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 HYDINQ4G0P3 5121 aa11.16□□□□□ -0.62
USP39-205ENST00000442708 EPPK1P58107 5090 aaKnown RBP11.15□□□□□ -0.62
USP39-205ENST00000442708 NXPH4O95158 308 aa11.15□□□□□ -0.62
USP39-205ENST00000442708 OR5AL1P0C617 328 aa11.15□□□□□ -0.62
USP39-205ENST00000442708 RPS20P60866 119 aaKnown RBP11.15□□□□□ -0.62
USP39-205ENST00000442708 TMEM241Q24JQ0 296 aa11.15□□□□□ -0.62
USP39-205ENST00000442708 FAM74A3Q4VXF1 159 aa11.15□□□□□ -0.62
USP39-205ENST00000442708 UFSP1Q6NVU6 142 aa11.15□□□□□ -0.62
USP39-205ENST00000442708 FAM231DQ6ZW35 169 aa11.15□□□□□ -0.62
USP39-205ENST00000442708 RPP21Q9H633 154 aaKnown RBP11.15□□□□□ -0.62
USP39-205ENST00000442708 PRO0255Q9UI72 69 aa11.15□□□□□ -0.62
USP39-205ENST00000442708 A0A096LPF7 62 aa11.14□□□□□ -0.63
USP39-205ENST00000442708 H3BNG1 76 aa11.14□□□□□ -0.63
USP39-205ENST00000442708 PAX4O43316 350 aa11.14□□□□□ -0.63
USP39-205ENST00000442708 GATA1P15976 413 aaPredicted RBP11.14□□□□□ -0.63
USP39-205ENST00000442708 RPL23P62829 140 aaKnown RBP11.14□□□□□ -0.63
USP39-205ENST00000442708 Q6ZSN1 163 aa11.14□□□□□ -0.63
USP39-205ENST00000442708 FER1L6-AS1Q8NA97 138 aa11.14□□□□□ -0.63
USP39-205ENST00000442708 SYT8Q8NBV8 401 aa11.14□□□□□ -0.63
USP39-205ENST00000442708 SFRP2Q96HF1 295 aa11.14□□□□□ -0.63
USP39-205ENST00000442708 LOC100131303A0A0U1RQF7 123 aa11.13□□□□□ -0.63
USP39-205ENST00000442708 SSTP61278 116 aa11.13□□□□□ -0.63
USP39-205ENST00000442708 SOHLH1Q5JUK2 328 aa11.13□□□□□ -0.63
USP39-205ENST00000442708 ZFP82Q8N141 532 aa11.13□□□□□ -0.63
USP39-205ENST00000442708 TPPP3Q9BW30 176 aa11.13□□□□□ -0.63
USP39-205ENST00000442708 NAT8Q9UHE5 227 aa11.13□□□□□ -0.63
USP39-205ENST00000442708 A0A087WWL8 130 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 A8MWV9 139 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 GATCO43716 136 aaKnown RBP11.12□□□□□ -0.63
USP39-205ENST00000442708 CRYGDP07320 174 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 ERVFC1-1P60608 527 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 LYZL1Q6UWQ5 148 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 GTSF1Q8WW33 167 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 ISOC2Q96AB3 205 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 MSRB1Q9NZV6 116 aa11.12□□□□□ -0.63
USP39-205ENST00000442708 XKRY2A2RUG3 117 aa11.11□□□□□ -0.63
USP39-205ENST00000442708 SLAQ13239 276 aa11.11□□□□□ -0.63
USP39-205ENST00000442708 SLC25A29Q8N8R3 303 aa11.11□□□□□ -0.63
USP39-205ENST00000442708 P0DMU3 169 aa11.1□□□□□ -0.63
USP39-205ENST00000442708 FAM231AP0DMU4 169 aa11.1□□□□□ -0.63
USP39-205ENST00000442708 FAM231CP0DMU5 169 aa11.1□□□□□ -0.63
USP39-205ENST00000442708 CTRLP40313 264 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms