RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 OVOL1O14753 267 aa12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 SLC25A16P16260 332 aa12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 PLNP26678 52 aa12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 DEFB113Q30KQ7 82 aa12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 SAMD5Q5TGI4 173 aa12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 CEND1Q8N111 149 aa12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 PHLDA1Q8WV24 401 aaPredicted RBP12.42□□□□□ -0.42
CLCNKA-203ENST00000439316 TRAV21A0A0B4J279 112 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 TRBV12-3P01733 135 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 NEGR1Q7Z3B1 354 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 OR10J6PQ8NGY7 276 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 UNC79Q9P2D8 2635 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 IGHV1-69DA0A0B4J2H0 117 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 IGHV1-69P01742 117 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 MSMBP08118 114 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 COTL1Q14019 142 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 MAPKAPK5-AS1Q8N8E1 139 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 MEGF9Q9H1U4 602 aa12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 BEX4Q9NWD9 120 aaPredicted RBP12.41□□□□□ -0.42
CLCNKA-203ENST00000439316 IGHV3OR16-10A0A075B7F0 116 aa12.4□□□□□ -0.42
CLCNKA-203ENST00000439316 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.4□□□□□ -0.42
CLCNKA-203ENST00000439316 MED14OSP0DP75 135 aa12.4□□□□□ -0.42
CLCNKA-203ENST00000439316 ORMDL2Q53FV1 153 aa12.4□□□□□ -0.42
CLCNKA-203ENST00000439316 RASL10AQ92737 203 aa12.4□□□□□ -0.42
CLCNKA-203ENST00000439316 FAM19A4Q96LR4 140 aa12.4□□□□□ -0.42
CLCNKA-203ENST00000439316 C20orf78Q9BR46 151 aa12.4□□□□□ -0.42
CLCNKA-203ENST00000439316 F8VRH5 84 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 J3KRW8 73 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 K7ERJ3 54 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 BRI3O95415 125 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 ASIPP42127 132 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 SUMO2P61956 95 aaKnown RBP12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 TAL2Q16559 108 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 DPH3P1Q9H4G8 78 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 SELENOKQ9Y6D0 94 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 HECTD1Q9ULT8 2610 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 A0A096LNT2 108 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 B4DSR2 109 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 H7C1H1 209 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 M0R381 172 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 APRG1Q8IVJ8 170 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 TOMM6Q96B49 74 aa12.39□□□□□ -0.43
CLCNKA-203ENST00000439316 PRRC2AP48634 2157 aaKnown RBP12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 RNF223E7ERA6 249 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 H3BUA1 57 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 K7EMI3 77 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 MAPK1IP1LQ8NDC0 245 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 TEX15Q9BXT5 2789 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 ZNF469Q96JG9 3925 aaPredicted RBP12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 ITPR3Q14573 2671 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 G3V4G9 280 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 ANXA2RQ3ZCQ2 193 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 Q5PR19 223 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 BRD3OSQ6XYD6 125 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 LRRC75A-AS1Q8N1F1 130 aa12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 NHP2Q9NX24 153 aaKnown RBP12.38□□□□□ -0.43
CLCNKA-203ENST00000439316 CR1P17927 2039 aa12.37□□□□□ -0.43
CLCNKA-203ENST00000439316 S100A4P26447 101 aaKnown RBP12.37□□□□□ -0.43
CLCNKA-203ENST00000439316 DEFB1P60022 68 aa12.37□□□□□ -0.43
CLCNKA-203ENST00000439316 NEXN-AS1Q8NBZ9 246 aa12.37□□□□□ -0.43
CLCNKA-203ENST00000439316 USMG5Q96IX5 58 aa12.37□□□□□ -0.43
CLCNKA-203ENST00000439316 TRBV7-9A0A0J9YWB2 115 aa12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 SPRY2O43597 315 aa12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 C14orf178Q8N769 122 aaPredicted RBP12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 RPL39LQ96EH5 51 aaKnown RBP12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 SCGB3A1Q96QR1 104 aa12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 PHLDA3Q9Y5J5 127 aa12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 PDZD2O15018 2839 aa12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 LINC01619G3V211 115 aa12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 CSTL1Q9H114 145 aa12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 CHTOPQ9Y3Y2 248 aaKnown RBP12.36□□□□□ -0.43
CLCNKA-203ENST00000439316 TLN2Q9Y4G6 2542 aa12.35□□□□□ -0.43
CLCNKA-203ENST00000439316 IGHG2P01859 326 aa12.35□□□□□ -0.43
CLCNKA-203ENST00000439316 E9PLD3 99 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 NXPH4O95158 308 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 IGHV4-38-2P0DP08 117 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 RNASE4P34096 147 aaKnown RBP12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 POM121L12Q8N7R1 296 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 LINC01356Q8N9X3 169 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 KLK15Q9H2R5 256 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 TRBV7-3A0A075B6L6 115 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 F6UB75 175 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 IGHV3-11P01762 117 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 MGPP08493 103 aa12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 RNASE3P12724 160 aaKnown RBP12.34□□□□□ -0.43
CLCNKA-203ENST00000439316 A6NDX4 124 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 OR11H12B2RN74 326 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 IGLL5B9A064 214 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 AVPP01185 164 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 C2orf66Q6UXQ4 117 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 OR11H1Q8NG94 326 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 OR11H2Q8NH07 326 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 BAALCQ8WXS3 180 aa12.33□□□□□ -0.44
CLCNKA-203ENST00000439316 MYMXA0A1B0GTQ4 84 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 GNRH2O43555 120 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 PPP1R17O96001 155 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 LY6EQ16553 131 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 KRTAP1-3Q8IUG1 177 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 Q96MF0 132 aa12.32□□□□□ -0.44
CLCNKA-203ENST00000439316 FLNAP21333 2647 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms