RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PRR20AP86496 221 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 PLXNA3P51805 1871 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 RBAKDNA6NC62 111 aa11.99□□□□□ -0.49
PTPRF-206ENST00000429895 FUSP35637 526 aaKnown RBP eCLIP11.99□□□□□ -0.49
PTPRF-206ENST00000429895 NCOR1O75376 2440 aa11.98□□□□□ -0.49
PTPRF-206ENST00000429895 ROS1P08922 2347 aa11.98□□□□□ -0.49
PTPRF-206ENST00000429895 MRPL36Q9P0J6 103 aaKnown RBP11.98□□□□□ -0.49
PTPRF-206ENST00000429895 K7EP13 123 aa11.98□□□□□ -0.49
PTPRF-206ENST00000429895 CFC1BP0CG36 223 aa11.98□□□□□ -0.49
PTPRF-206ENST00000429895 CFC1P0CG37 223 aa11.98□□□□□ -0.49
PTPRF-206ENST00000429895 HERV-K104P63124 156 aa11.98□□□□□ -0.49
PTPRF-206ENST00000429895 RBM3P98179 157 aaKnown RBP11.98□□□□□ -0.49
PTPRF-206ENST00000429895 C9orf47Q6ZRZ4 202 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 PKDREJQ9NTG1 2253 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 SPANXA1Q9NS26 97 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 ZFP2Q6ZN57 461 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 FANCD2OSQ96PS1 177 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 HHLA3Q9XRX5 114 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 IGLL5B9A064 214 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 ADORA2A-AS1P86434 159 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 C4orf48Q5BLP8 95 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 C8orf31Q8N9H6 132 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 C10orf105Q8TEF2 133 aa11.97□□□□□ -0.49
PTPRF-206ENST00000429895 PCP2Q8IVA1 136 aa11.96□□□□□ -0.49
PTPRF-206ENST00000429895 DAND5Q8N907 189 aa11.96□□□□□ -0.5
PTPRF-206ENST00000429895 C11orf52Q96A22 123 aa11.96□□□□□ -0.5
PTPRF-206ENST00000429895 SND1-IT1Q9HBX3 110 aa11.96□□□□□ -0.5
PTPRF-206ENST00000429895 ZFP36P26651 326 aaKnown RBP11.95□□□□□ -0.5
PTPRF-206ENST00000429895 CITED1Q99966 193 aa11.95□□□□□ -0.5
PTPRF-206ENST00000429895 DAZ2Q13117 558 aaKnown RBP11.95□□□□□ -0.5
PTPRF-206ENST00000429895 POU2AF1Q16633 256 aa11.95□□□□□ -0.5
PTPRF-206ENST00000429895 DAZ4Q86SG3 579 aaKnown RBP11.95□□□□□ -0.5
PTPRF-206ENST00000429895 DAZ3Q9NR90 486 aaKnown RBP11.95□□□□□ -0.5
PTPRF-206ENST00000429895 SEM1Q6ZVN7 128 aa11.95□□□□□ -0.5
PTPRF-206ENST00000429895 ZSWIM8A7E2V4 1837 aa11.95□□□□□ -0.5
PTPRF-206ENST00000429895 DOCK11Q5JSL3 2073 aa11.95□□□□□ -0.5
PTPRF-206ENST00000429895 DOCK9Q9BZ29 2069 aa11.95□□□□□ -0.5
PTPRF-206ENST00000429895 I3L2K1 104 aa11.95□□□□□ -0.5
PTPRF-206ENST00000429895 C5orf56Q8N8D9 126 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 PROP1O75360 226 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 MSRB1Q9NZV6 116 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 ZNF407Q9C0G0 2248 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 WFDC11Q8NEX6 87 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 KLK5Q9Y337 293 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-206ENST00000429895 NPSP0C0P6 89 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 C2orf70A6NJV1 201 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 NDUFB1O75438 58 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 Q8N1Y9 231 aa11.94□□□□□ -0.5
PTPRF-206ENST00000429895 A0A0J9YXV3 536 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 IGHG2P01859 326 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 C16orf54Q6UWD8 224 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 HELZP42694 1942 aaKnown RBP11.93□□□□□ -0.5
PTPRF-206ENST00000429895 K7EIM0 57 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 DEFB1P60022 68 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 ZNF747Q9BV97 191 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 K7EMI3 77 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 SH2D6Q7Z4S9 175 aa11.93□□□□□ -0.5
PTPRF-206ENST00000429895 IGLV11-55A0A075B6I3 123 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 CTSGP08311 255 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 MUSTN1Q8IVN3 82 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 WFDC9Q8NEX5 89 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 LENEPQ9Y5L5 61 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 FRMPD3Q5JV73 1810 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 NDUFA1O15239 70 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 RNF152Q8N8N0 203 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 WNK2Q9Y3S1 2297 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 IGLV3-1P01715 115 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 RNF138Q8WVD3 245 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 VSIG2Q96IQ7 327 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 SMAD5-AS1Q9Y6J3 95 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 Q8N9W7 124 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 FGF23Q9GZV9 251 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-206ENST00000429895 KLK12Q9UKR0 248 aa11.92□□□□□ -0.5
PTPRF-206ENST00000429895 GAGE12HA6NDE8 117 aa11.91□□□□□ -0.5
PTPRF-206ENST00000429895 RPL39P62891 51 aaKnown RBP11.91□□□□□ -0.5
PTPRF-206ENST00000429895 PRAC2D3DTV9 90 aa11.91□□□□□ -0.5
PTPRF-206ENST00000429895 CCL25O15444 150 aa11.91□□□□□ -0.5
PTPRF-206ENST00000429895 PLXND1Q9Y4D7 1925 aa11.9□□□□□ -0.5
PTPRF-206ENST00000429895 TM2D2Q9BX73 214 aa11.9□□□□□ -0.5
PTPRF-206ENST00000429895 SIP14410 1827 aa11.9□□□□□ -0.5
PTPRF-206ENST00000429895 KMT2EQ8IZD2 1858 aa11.9□□□□□ -0.5
PTPRF-206ENST00000429895 PRSS47A8MTI9 375 aa11.9□□□□□ -0.5
PTPRF-206ENST00000429895 SIVA1O15304 175 aa11.9□□□□□ -0.5
PTPRF-206ENST00000429895 C14orf132Q9NPU4 83 aa11.9□□□□□ -0.5
PTPRF-206ENST00000429895 IGKV3D-7A0A0C4DH55 119 aa11.9□□□□□ -0.51
PTPRF-206ENST00000429895 BAALCQ8WXS3 180 aa11.89□□□□□ -0.51
PTPRF-206ENST00000429895 C4orf3Q8WVX3 66 aa11.89□□□□□ -0.51
PTPRF-206ENST00000429895 OPRPNQ99935 248 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-206ENST00000429895 TRBV7-3A0A075B6L6 115 aa11.88□□□□□ -0.51
PTPRF-206ENST00000429895 MYCNOSP40205 109 aa11.88□□□□□ -0.51
PTPRF-206ENST00000429895 TMEM258P61165 79 aa11.88□□□□□ -0.51
PTPRF-206ENST00000429895 NREPQ16612 68 aa11.88□□□□□ -0.51
PTPRF-206ENST00000429895 Q6ZVH6 145 aa11.88□□□□□ -0.51
PTPRF-206ENST00000429895 IGFL2Q6UWQ7 119 aa11.87□□□□□ -0.51
PTPRF-206ENST00000429895 DEFB125Q8N687 156 aa11.87□□□□□ -0.51
PTPRF-206ENST00000429895 MGAMO43451 1857 aa11.87□□□□□ -0.51
PTPRF-206ENST00000429895 IGKV1-17P01599 117 aa11.87□□□□□ -0.51
PTPRF-206ENST00000429895 SPAG11BQ08648 103 aa11.87□□□□□ -0.51
PTPRF-206ENST00000429895 LINC00173Q6ZV60 143 aa11.87□□□□□ -0.51
PTPRF-206ENST00000429895 PLXNA4Q9HCM2 1894 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms