RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ZNF493Q6ZR52 646 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 GPHB5Q86YW7 130 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 RPL39LQ96EH5 51 aaKnown RBP6.35□□□□□ -1.39
CD44-208ENST00000428726 AP1S3Q96PC3 154 aa6.35□□□□□ -1.39
CD44-208ENST00000428726 GAGE10A6NGK3 116 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 NDUFS8O00217 210 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 SLURP1P55000 103 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 A0A096LNJ9 63 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 KNCNA6PVL3 124 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 CRXO43186 299 aaPredicted RBP6.34□□□□□ -1.39
CD44-208ENST00000428726 SPINK13Q1W4C9 94 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 C2orf91Q6ZV80 131 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 MEGF9Q9H1U4 602 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 HSPB8Q9UJY1 196 aa6.34□□□□□ -1.39
CD44-208ENST00000428726 RBAKDNA6NC62 111 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 FAM223BA6NKX1 122 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 F5H697 171 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 CRIP2P52943 208 aaPredicted RBP6.33□□□□□ -1.4
CD44-208ENST00000428726 ANXA2RQ3ZCQ2 193 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 OCIAD2Q56VL3 154 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 GTSCR1Q86UQ5 136 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 FAM223AQ8IWN6 122 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 JMJD8Q96S16 334 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 ST20Q9HBF5 79 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 PPP1R14DQ9NXH3 145 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 FBN1P35555 2871 aaKnown RBP6.33□□□□□ -1.4
CD44-208ENST00000428726 MUC4Q99102 2169 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 LEPP41159 167 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 FAM104BQ5XKR9 115 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 HIVEP1P15822 2718 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 IGKV2D-26A0A0A0MRZ7 120 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 RPL24P83731 157 aaKnown RBP6.33□□□□□ -1.4
CD44-208ENST00000428726 TMEM97Q5BJF2 176 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 C19orf54Q5BKX5 351 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 DEFB125Q8N687 156 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 OR2K2Q8NGT1 345 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 DPF1Q92782 380 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 TMEM160Q9NX00 188 aa6.33□□□□□ -1.4
CD44-208ENST00000428726 TMEM8BA6NDV4 472 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 C12orf54Q6X4T0 127 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 ORMDL3Q8N138 153 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 MRPL53Q96EL3 112 aaKnown RBP6.32□□□□□ -1.4
CD44-208ENST00000428726 IGHV4OR15-8A0A075B7B6 117 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 A0A087WW49 117 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 A6NDX4 124 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 APRG1Q8IVJ8 170 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 U3KQE9 123 aa6.32□□□□□ -1.4
CD44-208ENST00000428726 IGLC6P0CF74 106 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 PET117Q6UWS5 81 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 U3KQK5 164 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 TNFRSF6BO95407 300 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 CD7P09564 240 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 TMEM158Q8WZ71 300 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 IGHG2P01859 326 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 COX8AP10176 69 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 LINC01545Q5VT33 79 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 AMTNQ6UX39 209 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 OR10J6PQ8NGY7 276 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 IFI27L1Q96BM0 104 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 RNF185Q96GF1 192 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 FOXC2Q99958 501 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 Q9UF83 564 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 PHLDA3Q9Y5J5 127 aa6.31□□□□□ -1.4
CD44-208ENST00000428726 NBEAL1Q6ZS30 2694 aa6.3□□□□□ -1.4
CD44-208ENST00000428726 H3BUA1 57 aa6.3□□□□□ -1.4
CD44-208ENST00000428726 BRI3O95415 125 aa6.3□□□□□ -1.4
CD44-208ENST00000428726 MDFICQ9P1T7 246 aa6.3□□□□□ -1.4
CD44-208ENST00000428726 PEF1Q9UBV8 284 aaKnown RBP6.3□□□□□ -1.4
CD44-208ENST00000428726 ZNF256Q9Y2P7 627 aaPredicted RBP6.3□□□□□ -1.4
CD44-208ENST00000428726 A0A0G2JLM5 398 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 FXYD2P54710 66 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 PROK1P58294 105 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 COTL1Q14019 142 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 LINC01356Q8N9X3 169 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 USMG5Q96IX5 58 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 CNFNQ9BYD5 112 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 NHP2Q9NX24 153 aaKnown RBP6.29□□□□□ -1.4
CD44-208ENST00000428726 NDUFA4O00483 81 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 P0DMU3 169 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 FAM231AP0DMU4 169 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 FAM231CP0DMU5 169 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 RNASE13Q5GAN3 156 aaKnown RBP6.29□□□□□ -1.4
CD44-208ENST00000428726 C9orf47Q6ZRZ4 202 aa6.29□□□□□ -1.4
CD44-208ENST00000428726 IGHV3-64A0A075B6Q5 118 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 C9orf139Q6ZV77 190 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 OPRPNQ99935 248 aaPredicted RBP6.28□□□□□ -1.4
CD44-208ENST00000428726 MS4A6AQ9H2W1 248 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 DAZ1Q9NQZ3 744 aaKnown RBP6.28□□□□□ -1.4
CD44-208ENST00000428726 STAB1Q9NY15 2570 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 NOTCH1P46531 2555 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 IGHV3-16A0A0C4DH30 117 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 IGHV7-4-1A0A0J9YVY3 117 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 HBDP02042 147 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 PPBPP02775 128 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 IGHV4-31P0DP07 118 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 HOXD3P31249 432 aaPredicted RBP6.28□□□□□ -1.4
CD44-208ENST00000428726 CDKN1BP46527 198 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 DSCR9P59020 149 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 ZFAND2AQ8N6M9 145 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 OR11H1Q8NG94 326 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms