RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C9JAW5 83 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 CRLF1O75462 422 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 PRTN3P24158 256 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 B9A039 149 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 GAGE2BQ13066 116 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 GAGE2EQ4V326 116 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 TRPT1Q86TN4 253 aaKnown RBP8.1□□□□□ -1.11
USP54-204ENST00000422491 GAGE2DQ9UEU5 116 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 IGHV3-49A0A0A0MS15 119 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 MGPP08493 103 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 PMVKQ15126 192 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 TIMD4Q96H15 378 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 CCDC140Q96MF4 163 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 LENEPQ9Y5L5 61 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 PCNX1Q96RV3 2341 aa8.1□□□□□ -1.11
USP54-204ENST00000422491 BSNQ9UPA5 3926 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 SNCGO76070 127 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 IGHV3-33P01772 117 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 ZFAND2AQ8N6M9 145 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 TP53TG1Q9Y2A0 90 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 EBI3Q14213 229 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 KLK9Q2XQG4 91 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 Q6Q795 121 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 POM121L12Q8N7R1 296 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 ZNRF2Q8NHG8 242 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 FAM110DQ8TAY7 271 aaPredicted RBP8.09□□□□□ -1.11
USP54-204ENST00000422491 RAX2Q96IS3 184 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 KLK9Q9UKQ9 250 aa8.09□□□□□ -1.11
USP54-204ENST00000422491 A4D1N5 150 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 GAGE12JA6NER3 117 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 CCDC179H3BU77 68 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 GAGE7O76087 117 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 PPP1R17O96001 155 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 GAGE12FP0CL80 117 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 GAGE12GP0CL81 117 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 GAGE12IP0CL82 117 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 P0DMU3 169 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 FAM231AP0DMU4 169 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 FAM231CP0DMU5 169 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 GAGE4Q13068 117 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 ANXA2RQ3ZCQ2 193 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 Q8N1Y9 231 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 TMEM263Q8WUH6 116 aaKnown RBP8.08□□□□□ -1.12
USP54-204ENST00000422491 LINC01600Q96MT4 127 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 PHLDA3Q9Y5J5 127 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 U3KQE9 123 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 MGAQ8IWI9 3026 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 DMXL1Q9Y485 3027 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 CNOT1A5YKK6 2376 aaKnown RBP8.08□□□□□ -1.12
USP54-204ENST00000422491 J3KRW8 73 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 Q8N9W7 124 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 ITLN2Q8WWU7 325 aaPredicted RBP8.08□□□□□ -1.12
USP54-204ENST00000422491 C20orf173Q96LM9 149 aa8.08□□□□□ -1.12
USP54-204ENST00000422491 J3QQQ9 107 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 M0R1W7 72 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 MED14OSP0DP75 135 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 S100A4P26447 101 aaKnown RBP8.07□□□□□ -1.12
USP54-204ENST00000422491 RPL32P62910 135 aaKnown RBP8.07□□□□□ -1.12
USP54-204ENST00000422491 TMEM170BQ5T4T1 132 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 CLEC19AQ6UXS0 136 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 NTN5Q8WTR8 489 aaPredicted RBP8.07□□□□□ -1.12
USP54-204ENST00000422491 METTL26Q96S19 204 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 TRAV21A0A0B4J279 112 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 A0A0B4J2C4 111 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 TRBV7-9A0A0J9YWB2 115 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 ELANEP08246 267 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 IFITM1P13164 125 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 LINC00315P59091 139 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 RPL39P62891 51 aaKnown RBP8.07□□□□□ -1.12
USP54-204ENST00000422491 ZNF876PQ49A33 203 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 ODF3Q96PU9 254 aa8.07□□□□□ -1.12
USP54-204ENST00000422491 RPL13AP40429 203 aaKnown RBP8.06□□□□□ -1.12
USP54-204ENST00000422491 ECSCRQ19T08 205 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 VMO1Q7Z5L0 202 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 TMEM141Q96I45 108 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 C16orf92Q96LL3 132 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 TIMM17AQ99595 171 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 IGHV4OR15-8A0A075B7B6 117 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 A0A087WW49 117 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 RNASE3P12724 160 aaKnown RBP8.06□□□□□ -1.12
USP54-204ENST00000422491 POLR2KP53803 58 aaKnown RBP8.06□□□□□ -1.12
USP54-204ENST00000422491 CFAP161Q6P656 301 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 FAM110AQ9BQ89 295 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 KIF25-AS1Q9Y6Z4 181 aa8.06□□□□□ -1.12
USP54-204ENST00000422491 MAP1BP46821 2468 aaKnown RBP8.05□□□□□ -1.12
USP54-204ENST00000422491 LINC01620Q4KN68 170 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 TTC32Q5I0X7 151 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 C9orf139Q6ZV77 190 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 LINC00477Q96M19 166 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 DCHS2Q6V1P9 2916 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.05□□□□□ -1.12
USP54-204ENST00000422491 NXPH4O95158 308 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 LGALS3P17931 250 aaKnown RBP8.05□□□□□ -1.12
USP54-204ENST00000422491 DEFB104AQ8WTQ1 72 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 APC2O95996 2303 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 TEX49A0A1B0GTD5 131 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 OOSP1A8MZH6 123 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 ATP6V0E1O15342 81 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 SHISA2Q6UWI4 295 aa8.05□□□□□ -1.12
USP54-204ENST00000422491 GNRH2O43555 120 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms