RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 C17orf77Q96MU5 243 aa8.3□□□□□ -1.08
PTCH1-206ENST00000421141 DNAJC30Q96LL9 226 aa8.3□□□□□ -1.08
PTCH1-206ENST00000421141 HHLA3Q9XRX5 114 aa8.3□□□□□ -1.08
PTCH1-206ENST00000421141 PAX2Q02962 417 aa8.3□□□□□ -1.08
PTCH1-206ENST00000421141 INS-IGF2F8WCM5 200 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 FAM104BQ5XKR9 115 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 IGKV1-17P01599 117 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 HLA-DMBP28068 263 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 SETD2Q9BYW2 2564 aaPredicted RBP8.29□□□□□ -1.08
PTCH1-206ENST00000421141 IGKV1OR2-108A0A075B7D4 117 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 TMEM213A2RRL7 107 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 TSPAN13O95857 204 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 HILS1P60008 231 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 CLPSL2Q6UWE3 100 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 C11orf45Q8TAV5 145 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 PRR20EP86478 221 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 PRR20CP86479 221 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 PRR20DP86480 221 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 PRR20BP86481 221 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 PRR20AP86496 221 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 CYYR1Q96J86 154 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 C20orf144Q9BQM9 153 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 GNRH2O43555 120 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 TM2D2Q9BX73 214 aa8.29□□□□□ -1.08
PTCH1-206ENST00000421141 K7EQD1 137 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 NPC2P61916 151 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.28□□□□□ -1.08
PTCH1-206ENST00000421141 WI2-2373I1.2A0A1W2PRP0 233 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 LTAP01374 205 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 KLF5Q13887 457 aaPredicted RBP8.28□□□□□ -1.08
PTCH1-206ENST00000421141 TMEM263Q8WUH6 116 aaKnown RBP8.28□□□□□ -1.08
PTCH1-206ENST00000421141 AGPAT4-IT1Q9H0P7 198 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 LGALS9O00182 355 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 TRBV12-3P01733 135 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 CDSNQ15517 529 aa8.28□□□□□ -1.08
PTCH1-206ENST00000421141 Q6ZSV7 163 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 FAM231DQ6ZW35 169 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 USP9YO00507 2555 aaPredicted RBP8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BKO60814 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BJP06899 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BOP23527 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BBP33778 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BDP58876 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BCP62807 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST2H2BEQ16778 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.27□□□□□ -1.09
PTCH1-206ENST00000421141 GATD1Q8NB37 220 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BHQ93079 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BNQ99877 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 HIST1H2BMQ99879 126 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 WIPF3A6NGB9 483 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 IGLL5B9A064 214 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 TMEM61Q8N0U2 210 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 OVOL2Q9BRP0 275 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 SIGLEC8Q9NYZ4 499 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 TRAV26-2A0A0B4J265 109 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 PMVKQ15126 192 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 DEFB125Q8N687 156 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 Q8N8P6 123 aa8.27□□□□□ -1.09
PTCH1-206ENST00000421141 SMIM27A0A1W2PRY6 76 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 MRPL51Q4U2R6 128 aaKnown RBP8.26□□□□□ -1.09
PTCH1-206ENST00000421141 SPATA25Q9BR10 227 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 IGLL1P15814 213 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 ATP6V0E2Q8NHE4 81 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 PSMG3-AS1Q96PY0 264 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 IGLV2-14P01704 120 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 HERVK_113P63121 156 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 C20orf78Q9BR46 151 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 Q6ZQT7 251 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 H3BMM0 161 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 ADAMTSL5Q6ZMM2 481 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 UBE2WQ96B02 151 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 PLP1P60201 277 aa8.26□□□□□ -1.09
PTCH1-206ENST00000421141 C9orf47Q6ZRZ4 202 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 CHAC1Q9BUX1 264 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 A8MWP6 167 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 MAP6D1Q9H9H5 199 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 K7EMI3 77 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 PKD1L2Q7Z442 2459 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 UNQ9165/PRO28630Q6UXU0 137 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 Q6ZWC4 215 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 EGR2P11161 476 aaPredicted RBP8.25□□□□□ -1.09
PTCH1-206ENST00000421141 DDTP30046 118 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 C2orf66Q6UXQ4 117 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 XCL1P47992 114 aa8.25□□□□□ -1.09
PTCH1-206ENST00000421141 CTAG1AP78358 180 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 CXCL1P09341 107 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 E7EUB6 86 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 TRBV7-3A0A075B6L6 115 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 SMIM9A6NGZ8 99 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 ZNF726P1Q15940 193 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 POLQO75417 2590 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 PRSS29PA6NIE9 313 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 NDUFS6O75380 124 aaKnown RBP8.24□□□□□ -1.09
PTCH1-206ENST00000421141 FANCD2OSQ96PS1 177 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 NDUFAF3Q9BU61 184 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 ERG28Q9UKR5 140 aa8.24□□□□□ -1.09
PTCH1-206ENST00000421141 ESDP10768 282 aa8.23□□□□□ -1.09
PTCH1-206ENST00000421141 ATRAIDQ6UW56 229 aa8.23□□□□□ -1.09
PTCH1-206ENST00000421141 DEFB4AO15263 64 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms