RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF688P0C7X2 276 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 ORM2P19652 201 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 PSMB3P49720 205 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 ZNF90Q03938 601 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 DEFB135Q30KP9 77 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 OR10G9Q8NGN4 311 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 TVP23CQ96ET8 276 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 MAP1LC3CQ9BXW4 147 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 HIGD1AQ9Y241 93 aa4.56□□□□□ -1.68
USP40-202ENST00000409945 TMEM250H0YL14 139 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 HYPMO75409 117 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 CA1P00915 261 aaPredicted RBP4.55□□□□□ -1.68
USP40-202ENST00000409945 OR5G3P0C626 314 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 RPL7P18124 248 aaKnown RBP4.55□□□□□ -1.68
USP40-202ENST00000409945 PMCHP20382 165 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 MEF2BQ02080 365 aaPredicted RBP4.55□□□□□ -1.68
USP40-202ENST00000409945 PSMG4Q5JS54 123 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 SPATA31B1PQ5VZV4 182 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 EBLN2Q6P2I7 272 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 CYP2G1PQ6ZSU1 146 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 SLC25A22Q9H936 323 aa4.55□□□□□ -1.68
USP40-202ENST00000409945 A0A0J9YWU9 116 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 LINC00869P0C866 280 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 FGF8P55075 233 aaPredicted RBP4.54□□□□□ -1.68
USP40-202ENST00000409945 RAB5BP61020 215 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 ACTL10Q5JWF8 245 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 SSX7Q7RTT5 188 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 DCANP1Q8TF63 244 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 HIST1H2BAQ96A08 127 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 TXNDC17Q9BRA2 123 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 CHCHD5Q9BSY4 110 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 NDUFAF3Q9BU61 184 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 TMEM242Q9NWH2 141 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 NBEAL2Q6ZNJ1 2754 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 IGKV1D-37A0A075B6S9 117 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 ZNF98A6NK75 572 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 C1orf196B1AJZ1 125 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 ISLRO14498 428 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 COX7A2P2O60397 106 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 SMIM15Q7Z3B0 74 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 PFDN5Q99471 154 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 JPT2Q9H910 190 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 EDA2RQ9HAV5 297 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 RETNQ9HD89 108 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 BIN3Q9NQY0 253 aa4.54□□□□□ -1.68
USP40-202ENST00000409945 ZNF727A8MUV8 499 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 PDE6DO43924 150 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 RAB5AP20339 215 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 AKR1C3P42330 323 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 RPL29P47914 159 aaKnown RBP4.53□□□□□ -1.68
USP40-202ENST00000409945 CASC10Q5T4H9 136 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 FOXI2Q6ZQN5 318 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 OR11H2Q8NH07 326 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 MGST2Q99735 147 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 SMIM7Q9BQ49 75 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 SLC25A39Q9BZJ4 359 aaPredicted RBP4.53□□□□□ -1.68
USP40-202ENST00000409945 DOK5Q9P104 306 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 NAT8Q9UHE5 227 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 PXMP4Q9Y6I8 212 aa4.53□□□□□ -1.68
USP40-202ENST00000409945 IGKV1OR2-108A0A075B7D4 117 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 NUPR2A6NF83 97 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 DUSP14O95147 198 aaKnown RBP4.52□□□□□ -1.69
USP40-202ENST00000409945 CXorf1O96002 111 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 RHOBP62745 196 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 ZFAND6Q6FIF0 208 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 BPIFA4PQ86YQ2 179 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 FAM24BQ8N5W8 94 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 ISOC2Q96AB3 205 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 KLK5Q9Y337 293 aaPredicted RBP4.52□□□□□ -1.69
USP40-202ENST00000409945 KNCNA6PVL3 124 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 F6UZH7 168 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 H3BRN7 92 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 HLA-DRB4P13762 266 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 MIFP14174 115 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 GATA2P23769 480 aaPredicted RBP4.52□□□□□ -1.69
USP40-202ENST00000409945 TMEM241Q24JQ0 296 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 COX19Q49B96 90 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 C10orf113Q5VZT2 155 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 LINC00305Q7Z4B0 112 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 OR4B1Q8NGF8 309 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 YPEL4Q96NS1 127 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 SHANK2-AS3Q9BTD1 123 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 ARL2-SNX15V9GYD0 113 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 HLA-DRB4X5D2U9 266 aa4.52□□□□□ -1.69
USP40-202ENST00000409945 HUWE1Q7Z6Z7 4374 aaKnown RBP4.52□□□□□ -1.69
USP40-202ENST00000409945 C11orf94C9JXX5 98 aa4.51□□□□□ -1.69
USP40-202ENST00000409945 HMGB3O15347 200 aaKnown RBP4.51□□□□□ -1.69
USP40-202ENST00000409945 MIC13Q5XKP0 118 aa4.51□□□□□ -1.69
USP40-202ENST00000409945 SLC50A1Q9BRV3 221 aa4.51□□□□□ -1.69
USP40-202ENST00000409945 TMEM208Q9BTX3 173 aa4.51□□□□□ -1.69
USP40-202ENST00000409945 C11orf68Q9H3H3 251 aaKnown RBP4.51□□□□□ -1.69
USP40-202ENST00000409945 GOLT1BQ9Y3E0 138 aa4.51□□□□□ -1.69
USP40-202ENST00000409945 TMEM189A5PLL7 270 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 H3BMM0 161 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 ARL14EPLP0DKL9 152 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 TAS2R45P59539 299 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 PSG9Q00887 426 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 ELOBQ15370 118 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 ZNF738Q8NE65 137 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 RPUSD4Q96CM3 377 aaKnown RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms