RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 Q6ZN92 141 aa15□□□□□ -0.01
USP39-204ENST00000409766 Q8N8P6 123 aa15□□□□□ -0.01
USP39-204ENST00000409766 PMCHL2Q9BQD1 86 aa15□□□□□ -0.01
USP39-204ENST00000409766 TRAV12-3A0A0B4J271 114 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 C7orf71A4D174 169 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 FOXC2Q99958 501 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 ST20Q9HBF5 79 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 ESM1Q9NQ30 184 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 MUC4Q99102 2169 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 AGRNO00468 2067 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 OR1N2Q8NGR9 330 aa14.99□□□□□ -0.01
USP39-204ENST00000409766 NXPH4O95158 308 aa14.98□□□□□ -0.01
USP39-204ENST00000409766 DPF1Q92782 380 aa14.98□□□□□ -0.01
USP39-204ENST00000409766 DUX3Q96PT4 197 aa14.98□□□□□ -0.01
USP39-204ENST00000409766 DPH3P1Q9H4G8 78 aa14.98□□□□□ -0.01
USP39-204ENST00000409766 NF1P21359 2839 aa14.98□□□□□ -0.01
USP39-204ENST00000409766 SORL1Q92673 2214 aa14.98□□□□□ -0.01
USP39-204ENST00000409766 IGKV3-20P01619 116 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 FCER1GP30273 86 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 KHDC1LQ5JSQ8 128 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 C14orf178Q8N769 122 aaPredicted RBP14.97□□□□□ -0.01
USP39-204ENST00000409766 OR9G4Q8NGQ1 327 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 CD5LO43866 347 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 HNRNPA3P51991 378 aaKnown RBP14.97□□□□□ -0.01
USP39-204ENST00000409766 FOXI2Q6ZQN5 318 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 IFI27L1Q96BM0 104 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 PEMTQ9UBM1 199 aa14.97□□□□□ -0.01
USP39-204ENST00000409766 DUSP14O95147 198 aaKnown RBP14.96□□□□□ -0.01
USP39-204ENST00000409766 TSPOP30536 169 aa14.96□□□□□ -0.01
USP39-204ENST00000409766 KLHL30-AS1Q8NEE0 82 aa14.96□□□□□ -0.01
USP39-204ENST00000409766 CUBNO60494 3623 aa14.96□□□□□ -0.01
USP39-204ENST00000409766 TRAV12-2A0A075B6T6 113 aa14.95□□□□□ -0.02
USP39-204ENST00000409766 HSBP1L1C9JCN9 74 aa14.95□□□□□ -0.02
USP39-204ENST00000409766 CDKN1BP46527 198 aa14.95□□□□□ -0.02
USP39-204ENST00000409766 LGALS9BQ3B8N2 356 aa14.95□□□□□ -0.02
USP39-204ENST00000409766 LGALS9CQ6DKI2 356 aa14.95□□□□□ -0.02
USP39-204ENST00000409766 DLX4Q92988 240 aaPredicted RBP14.95□□□□□ -0.02
USP39-204ENST00000409766 AP1S3Q96PC3 154 aa14.95□□□□□ -0.02
USP39-204ENST00000409766 CD7P09564 240 aa14.94□□□□□ -0.02
USP39-204ENST00000409766 HIST2H2BDQ6DRA6 164 aa14.94□□□□□ -0.02
USP39-204ENST00000409766 AMTNQ6UX39 209 aa14.94□□□□□ -0.02
USP39-204ENST00000409766 YAE1D1Q9NRH1 226 aa14.94□□□□□ -0.02
USP39-204ENST00000409766 ACANP16112 2415 aa14.94□□□□□ -0.02
USP39-204ENST00000409766 SPINK13Q1W4C9 94 aa14.93□□□□□ -0.02
USP39-204ENST00000409766 MRPS16Q9Y3D3 137 aaKnown RBP14.93□□□□□ -0.02
USP39-204ENST00000409766 TMEM158Q8WZ71 300 aa14.93□□□□□ -0.02
USP39-204ENST00000409766 RASL10AQ92737 203 aa14.93□□□□□ -0.02
USP39-204ENST00000409766 GOLT1BQ9Y3E0 138 aa14.93□□□□□ -0.02
USP39-204ENST00000409766 TRAV2A0A0B4J234 112 aa14.92□□□□□ -0.02
USP39-204ENST00000409766 NUTF2P61970 127 aaKnown RBP14.92□□□□□ -0.02
USP39-204ENST00000409766 POM121L12Q8N7R1 296 aa14.92□□□□□ -0.02
USP39-204ENST00000409766 KIF25-AS1Q9Y6Z4 181 aa14.92□□□□□ -0.02
USP39-204ENST00000409766 LAGE3Q14657 143 aa14.92□□□□□ -0.02
USP39-204ENST00000409766 TMEM61Q8N0U2 210 aa14.92□□□□□ -0.02
USP39-204ENST00000409766 C18orf15Q96N68 181 aa14.92□□□□□ -0.02
USP39-204ENST00000409766 IGHV3-16A0A0C4DH30 117 aa14.91□□□□□ -0.02
USP39-204ENST00000409766 SMIM2Q9BVW6 85 aa14.91□□□□□ -0.02
USP39-204ENST00000409766 HECTD1Q9ULT8 2610 aa14.91□□□□□ -0.02
USP39-204ENST00000409766 TCAPO15273 167 aa14.9□□□□□ -0.02
USP39-204ENST00000409766 MGPP08493 103 aa14.9□□□□□ -0.02
USP39-204ENST00000409766 LINC00315P59091 139 aa14.9□□□□□ -0.02
USP39-204ENST00000409766 C9orf85Q96MD7 179 aa14.9□□□□□ -0.02
USP39-204ENST00000409766 C20orf78Q9BR46 151 aa14.9□□□□□ -0.02
USP39-204ENST00000409766 ANK3Q12955 4377 aaKnown RBP14.9□□□□□ -0.02
USP39-204ENST00000409766 DEFB131AP59861 70 aa14.9□□□□□ -0.02
USP39-204ENST00000409766 SUMO2P61956 95 aaKnown RBP14.9□□□□□ -0.02
USP39-204ENST00000409766 IGHV1OR15-1A0A075B7D0 117 aa14.89□□□□□ -0.03
USP39-204ENST00000409766 BATFQ16520 125 aa14.89□□□□□ -0.03
USP39-204ENST00000409766 Q8N1Y9 231 aa14.89□□□□□ -0.03
USP39-204ENST00000409766 RPL39LQ96EH5 51 aaKnown RBP14.89□□□□□ -0.03
USP39-204ENST00000409766 TP73-AS1Q9UF72 201 aa14.89□□□□□ -0.03
USP39-204ENST00000409766 KNCNA6PVL3 124 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 A8MTW9 85 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 SMIM17P0DL12 118 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 RAX2Q96IS3 184 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 MDFICQ9P1T7 246 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 HLA-DRB4P13762 266 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 DEFB114Q30KQ6 69 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 SLC25A34Q6PIV7 304 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 JPT2Q9H910 190 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 HLA-DRB4X5D2U9 266 aa14.88□□□□□ -0.03
USP39-204ENST00000409766 DYNLRB2Q8TF09 96 aa14.87□□□□□ -0.03
USP39-204ENST00000409766 FASNP49327 2511 aaKnown RBP14.87□□□□□ -0.03
USP39-204ENST00000409766 H3BMM0 161 aa14.87□□□□□ -0.03
USP39-204ENST00000409766 RNASE1P07998 156 aaKnown RBP14.87□□□□□ -0.03
USP39-204ENST00000409766 FHL3Q13643 280 aa14.87□□□□□ -0.03
USP39-204ENST00000409766 PPP1R17O96001 155 aa14.86□□□□□ -0.03
USP39-204ENST00000409766 CD28P10747 220 aa14.86□□□□□ -0.03
USP39-204ENST00000409766 C11orf44Q8N8P7 122 aa14.86□□□□□ -0.03
USP39-204ENST00000409766 DKK2Q9UBU2 259 aa14.86□□□□□ -0.03
USP39-204ENST00000409766 ATP5LO75964 103 aa14.85□□□□□ -0.03
USP39-204ENST00000409766 ZNF124Q15973 351 aa14.85□□□□□ -0.03
USP39-204ENST00000409766 C16orf95Q9H693 158 aa14.85□□□□□ -0.03
USP39-204ENST00000409766 K7EMI3 77 aa14.84□□□□□ -0.03
USP39-204ENST00000409766 RBMY1A1P0DJD3 496 aaKnown RBP14.84□□□□□ -0.03
USP39-204ENST00000409766 RBMY1CP0DJD4 496 aa14.84□□□□□ -0.03
USP39-204ENST00000409766 COX8AP10176 69 aa14.84□□□□□ -0.03
USP39-204ENST00000409766 ODF1Q14990 250 aa14.84□□□□□ -0.03
USP39-204ENST00000409766 RBMY1FQ15415 496 aaKnown RBP14.84□□□□□ -0.03
USP39-204ENST00000409766 CD300EQ496F6 205 aaPredicted RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms