RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 KIR2DL5BA0A0G2JN68 375 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 KIR2DL5BA0A0G2JPC4 375 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF503-AS2A6NEH8 195 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 LINC01545Q5VT33 79 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 KIR2DL5AQ8N109 375 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 Q6P435 159 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 SIRPDQ9H106 197 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 CADP27708 2225 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 A6NDX4 124 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF407Q9C0G0 2248 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 FSHBP01225 129 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 FUSP35637 526 aaKnown RBP eCLIP5.73□□□□□ -1.49
SCN9A-202ENST00000409435 SPINK13Q1W4C9 94 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 CHD8Q9HCK8 2581 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 A0A096LPF7 62 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 H3BQ85 93 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 IGLC1P0CG04 106 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 ID3Q02535 119 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 C3orf22Q8N5N4 141 aa5.73□□□□□ -1.49
SCN9A-202ENST00000409435 ADCYAP1P18509 176 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 PRR15LQ9BU68 103 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 PFN1P07737 140 aaKnown RBP5.72□□□□□ -1.49
SCN9A-202ENST00000409435 UBE2AP49459 152 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 Q8N8P6 123 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 SMIM2Q9BVW6 85 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 A0A0A6YYD4 124 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 FAM110AQ9BQ89 295 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 UBE2BP63146 152 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 APRG1Q8IVJ8 170 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 NDUFA12Q9UI09 145 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 DOCK10Q96BY6 2186 aa5.72□□□□□ -1.49
SCN9A-202ENST00000409435 SH2D1AO60880 128 aa5.71□□□□□ -1.49
SCN9A-202ENST00000409435 TRBV12-3P01733 135 aa5.71□□□□□ -1.49
SCN9A-202ENST00000409435 HERVK_113P63121 156 aa5.71□□□□□ -1.49
SCN9A-202ENST00000409435 ZNF833PQ6ZTB9 187 aa5.71□□□□□ -1.49
SCN9A-202ENST00000409435 C5orf56Q8N8D9 126 aa5.71□□□□□ -1.49
SCN9A-202ENST00000409435 IGKV1-9A0A0C4DH69 117 aa5.71□□□□□ -1.49
SCN9A-202ENST00000409435 M0QXV9 152 aa5.71□□□□□ -1.49
SCN9A-202ENST00000409435 CHD3Q12873 2000 aaKnown RBP5.71□□□□□ -1.5
SCN9A-202ENST00000409435 P0DMU3 169 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 FAM231AP0DMU4 169 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 FAM231CP0DMU5 169 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 GTF3C1Q12789 2109 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 NKAPP1Q8N9T2 125 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 VSIG2Q96IQ7 327 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 TRAV10A0A0B4J240 114 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 C11orf71Q6IPW1 123 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 LINC00643Q86TS7 51 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 IGKV1-12A0A0C4DH73 117 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 M0R2N4 97 aa5.71□□□□□ -1.5
SCN9A-202ENST00000409435 A4D1N5 150 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 PDE6HQ13956 83 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 C14orf177Q52M58 125 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 C16orf74Q96GX8 76 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 TP53TG1Q9Y2A0 90 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 NDUFB1O75438 58 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 ANKRD39Q53RE8 183 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 C2orf66Q6UXQ4 117 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 NOP10Q9NPE3 64 aaKnown RBP5.7□□□□□ -1.5
SCN9A-202ENST00000409435 IGHV1OR15-1A0A075B7D0 117 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 YPEL3P61236 119 aaPredicted RBP5.7□□□□□ -1.5
SCN9A-202ENST00000409435 TRPT1Q86TN4 253 aaKnown RBP5.7□□□□□ -1.5
SCN9A-202ENST00000409435 DEFB131BA0A096LNP1 70 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 SMKR1H3BMG3 65 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 DEFB4AO15263 64 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 C17orf58Q2M2W7 97 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 SCN8AQ9UQD0 1980 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 PTPRDP23468 1912 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 IGKV1-27A0A075B6S5 117 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 F8VRH5 84 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 RNF138Q8WVD3 245 aa5.7□□□□□ -1.5
SCN9A-202ENST00000409435 CEP192Q8TEP8 1941 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 SMIM9A6NGZ8 99 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 J3QQQ9 107 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 C4orf48Q5BLP8 95 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 Q6ZVH6 145 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 TRGV9Q99603 122 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 A6NED7 52 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 CRYGCP07315 174 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 WFDC2Q14508 124 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 NREPQ16612 68 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 LINC01620Q4KN68 170 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 RNF152Q8N8N0 203 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 HEATR5BQ9P2D3 2071 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 SPG11Q96JI7 2443 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 H0YGX0 51 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 ZNF492Q9P255 531 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 ROS1P08922 2347 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 IGKV2-40A0A087WW87 121 aaPredicted RBP5.69□□□□□ -1.5
SCN9A-202ENST00000409435 IGKV2D-40P01614 121 aaPredicted RBP5.69□□□□□ -1.5
SCN9A-202ENST00000409435 PFN2P35080 140 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 NFE4Q86UQ8 179 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 LYPD1Q8N2G4 141 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 C14orf178Q8N769 122 aaPredicted RBP5.69□□□□□ -1.5
SCN9A-202ENST00000409435 SLC25A29Q8N8R3 303 aa5.69□□□□□ -1.5
SCN9A-202ENST00000409435 TRBV25-1A0A075B6N4 114 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 NDUFC1O43677 76 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 TIMM17BO60830 172 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 IGF1P05019 195 aa5.68□□□□□ -1.5
SCN9A-202ENST00000409435 LAIR2Q6ISS4 152 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms