RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ZNF705GA8MUZ8 300 aaPredicted RBP6.55□□□□□ -1.36
VPS53-203ENST00000401468 KRBOX1C9JBD0 128 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 PRM2P04554 102 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 SFTA3P0C7M3 94 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 ADCYAP1P18509 176 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 AZU1P20160 251 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 DAZ2Q13117 558 aaKnown RBP6.55□□□□□ -1.36
VPS53-203ENST00000401468 RRN3P1Q2M238 152 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 SOHLH1Q5JUK2 328 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 CEMP1Q6PRD7 247 aaPredicted RBP6.55□□□□□ -1.36
VPS53-203ENST00000401468 FAM159AQ6UWV7 190 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 COMMD7Q86VX2 200 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 LINC00612Q8N6U2 182 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 PHLDA1Q8WV24 401 aaPredicted RBP6.55□□□□□ -1.36
VPS53-203ENST00000401468 TMEM208Q9BTX3 173 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 SDF2L1Q9HCN8 221 aa6.55□□□□□ -1.36
VPS53-203ENST00000401468 IGHV3OR16-12A0A075B7B8 117 aa6.54□□□□□ -1.36
VPS53-203ENST00000401468 IGHV3-16A0A0C4DH30 117 aa6.54□□□□□ -1.36
VPS53-203ENST00000401468 TMEM218A2RU14 115 aa6.54□□□□□ -1.36
VPS53-203ENST00000401468 TYMSP04818 313 aa6.54□□□□□ -1.36
VPS53-203ENST00000401468 TCL1AP56279 114 aa6.54□□□□□ -1.36
VPS53-203ENST00000401468 RPL23P62829 140 aaKnown RBP6.54□□□□□ -1.36
VPS53-203ENST00000401468 TMEM241Q24JQ0 296 aa6.54□□□□□ -1.36
VPS53-203ENST00000401468 NAT8Q9UHE5 227 aa6.54□□□□□ -1.36
VPS53-203ENST00000401468 TRGV11A0A075B6L2 103 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 NUPR2A6NF83 97 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 LYRM9A8MSI8 78 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 RNASE3P12724 160 aaKnown RBP6.53□□□□□ -1.36
VPS53-203ENST00000401468 PIK3CD-AS1Q5SR53 167 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 MUC21Q5SSG8 566 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 PTH2Q96A98 100 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 ISOC2Q96AB3 205 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 C9orf85Q96MD7 179 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 C18orf15Q96N68 181 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 SEC11CQ9BY50 192 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 SCRT2Q9NQ03 307 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 IL36BQ9NZH7 164 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 MDFICQ9P1T7 246 aa6.53□□□□□ -1.36
VPS53-203ENST00000401468 TEX48A0A1B0GUV7 120 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 CBY3A6NI87 242 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 B4DEV8 164 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 GNRH2O43555 120 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 SPINK4O60575 86 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 MGST1P10620 155 aaKnown RBP6.52□□□□□ -1.37
VPS53-203ENST00000401468 CEBPGP53567 150 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 ZNF415Q09FC8 603 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 PNRC1Q12796 327 aaPredicted RBP6.52□□□□□ -1.37
VPS53-203ENST00000401468 OR5I1Q13606 314 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 LGALS9BQ3B8N2 356 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 CT83Q5H943 113 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 NUDT10Q8NFP7 164 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 C11orf45Q8TAV5 145 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 NUDT11Q96G61 164 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 NDUFAF3Q9BU61 184 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 OSTCQ9NRP0 149 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 DKK2Q9UBU2 259 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 CELA1Q9UNI1 258 aa6.52□□□□□ -1.37
VPS53-203ENST00000401468 CARHSP1Q9Y2V2 147 aaKnown RBP6.52□□□□□ -1.37
VPS53-203ENST00000401468 TIMM8BQ9Y5J9 83 aaPredicted RBP6.52□□□□□ -1.37
VPS53-203ENST00000401468 SNAI2O43623 268 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 NXPH4O95158 308 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 ORM1P02763 201 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 OR5AL1P0C617 328 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 IGLC6P0CF74 106 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 FOXA3P55318 350 aaPredicted RBP6.51□□□□□ -1.37
VPS53-203ENST00000401468 PRR27Q6MZM9 219 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 RASL10AQ92737 203 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 SPXQ9BT56 116 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 RNASE7Q9H1E1 156 aaKnown RBP6.51□□□□□ -1.37
VPS53-203ENST00000401468 GSN-AS1Q9NRJ2 163 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 NAGKQ9UJ70 344 aa6.51□□□□□ -1.37
VPS53-203ENST00000401468 FAM231BA6NCW3 169 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 IGLL5B9A064 214 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 M0R036 132 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 P01737 135 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 SPART-AS1P0CW21 52 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 HTN1P15515 57 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 ASIPP42127 132 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 EMP1P54849 157 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 RPS20P60866 119 aaKnown RBP6.5□□□□□ -1.37
VPS53-203ENST00000401468 RPL19P84098 196 aaKnown RBP6.5□□□□□ -1.37
VPS53-203ENST00000401468 NDUFA5Q16718 116 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 FAM222AQ5U5X8 452 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 Q6ZTC4 211 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 DAZAP1Q96EP5 407 aaKnown RBP6.5□□□□□ -1.37
VPS53-203ENST00000401468 SFRP2Q96HF1 295 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 CNFNQ9BYD5 112 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 RPP21Q9H633 154 aaKnown RBP6.5□□□□□ -1.37
VPS53-203ENST00000401468 KLK5Q9Y337 293 aaPredicted RBP6.5□□□□□ -1.37
VPS53-203ENST00000401468 V9GYV3 84 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 ABCA13Q86UQ4 5058 aa6.5□□□□□ -1.37
VPS53-203ENST00000401468 SNURFLB1AK76 121 aa6.49□□□□□ -1.37
VPS53-203ENST00000401468 M0R2P5 195 aa6.49□□□□□ -1.37
VPS53-203ENST00000401468 CTRLP40313 264 aa6.49□□□□□ -1.37
VPS53-203ENST00000401468 ERVFC1-1P60608 527 aa6.49□□□□□ -1.37
VPS53-203ENST00000401468 ADIRFQ15847 76 aa6.49□□□□□ -1.37
VPS53-203ENST00000401468 C12orf74Q32Q52 190 aa6.49□□□□□ -1.37
VPS53-203ENST00000401468 GFRA4Q9GZZ7 299 aa6.49□□□□□ -1.37
VPS53-203ENST00000401468 NOP10Q9NPE3 64 aaKnown RBP6.49□□□□□ -1.37
VPS53-203ENST00000401468 VPS13DQ5THJ4 4388 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms