RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FAM216BQ8N7L0 139 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 C3orf56Q8N813 242 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 VSTM2AQ8TAG5 236 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 PMCHL2Q9BQD1 86 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 ST20Q9HBF5 79 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 TAS2R4Q9NYW5 299 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 CABIN1Q9Y6J0 2220 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 COL4A1P02462 1669 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 NUP205Q92621 2012 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 USP34Q70CQ2 3546 aa2.6□□□□□ -1.99
HMGB1-204ENST00000399489 ZNF638Q14966 1978 aaKnown RBP2.6□□□□□ -1.99
HMGB1-204ENST00000399489 LRRC37AA6NMS7 1700 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 IGKV1D-37A0A075B6S9 117 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 A0A087WXM4 84 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 ZNF705FA8MVS1 300 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-204ENST00000399489 C3orf84H3BNL1 204 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 PANO1I0J062 215 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 ZNF705BP0CI00 300 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-204ENST00000399489 POLR2JP52435 117 aaKnown RBP2.59□□□□□ -1.99
HMGB1-204ENST00000399489 FAM229BQ4G0N7 80 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 ZNF660Q6AZW8 331 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-204ENST00000399489 SLC25A26Q70HW3 274 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 RPRMLQ8N4K4 120 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 SIGLECL1Q8N7X8 197 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 OR2T35Q8NGX2 323 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 TMEM242Q9NWH2 141 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 KIAA1671Q9BY89 1806 aa2.59□□□□□ -1.99
HMGB1-204ENST00000399489 SIPA1L3O60292 1781 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-204ENST00000399489 WDFY4Q6ZS81 3184 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 NCOR1O75376 2440 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 ATAD5Q96QE3 1844 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 A0A1W2PNU3 283 aaPredicted RBP2.59□□□□□ -2
HMGB1-204ENST00000399489 A0A1W2PQD3 144 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 C17orf98A8MV24 154 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 H3BQ85 93 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 H3BRM9 83 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 TIMM17BO60830 172 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 TCL1BO95988 128 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 SHBGP04278 402 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 ATP5EP56381 51 aaPredicted RBP2.59□□□□□ -2
HMGB1-204ENST00000399489 SS18Q15532 418 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 PATE2Q6UY27 113 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 HEPN1Q6WQI6 88 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 Q6ZQT7 251 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 TSKUQ8WUA8 353 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 DPH3P1Q9H4G8 78 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 CACFD1Q9UGQ2 172 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 SPCS1Q9Y6A9 102 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 SCN9AQ15858 1988 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 LAMB4A4D0S4 1761 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 LAMB1P07942 1786 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 C5orf42Q9H799 3197 aa2.59□□□□□ -2
HMGB1-204ENST00000399489 DCHS1Q96JQ0 3298 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 MYO15AQ9UKN7 3530 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 ZSWIM8A7E2V4 1837 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 UBE2L5PA0A1B0GUS4 154 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 SAA1P0DJI8 122 aaPredicted RBP2.58□□□□□ -2
HMGB1-204ENST00000399489 IGLC2P0DOY2 106 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 IGLC3P0DOY3 106 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 CKS2P33552 79 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 DYNLT1P63172 113 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 UBE2L3P68036 154 aaKnown RBP2.58□□□□□ -2
HMGB1-204ENST00000399489 C2orf83Q53S99 150 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 C12orf73Q69YU5 71 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 C2orf91Q6ZV80 131 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 FP248Q71RG6 208 aaPredicted RBP2.58□□□□□ -2
HMGB1-204ENST00000399489 SBSPONQ8IVN8 264 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 C15orf53Q8NAA6 179 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 OR10AG1Q8NH19 301 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 PFN4Q8NHR9 129 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 SPTSSAQ969W0 71 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 C20orf78Q9BR46 151 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 HHLA3Q9XRX5 114 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 CHD3Q12873 2000 aaKnown RBP2.58□□□□□ -2
HMGB1-204ENST00000399489 CFAP54Q96N23 3096 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 ZNF646O15015 1829 aaPredicted RBP2.58□□□□□ -2
HMGB1-204ENST00000399489 MYH6P13533 1939 aa2.58□□□□□ -2
HMGB1-204ENST00000399489 DNAH12Q6ZR08 3092 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 IL5P05113 134 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 CCL4P13236 92 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 CBLN1P23435 193 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 CD24P25063 80 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 FAUP35544 74 aaKnown RBP2.57□□□□□ -2
HMGB1-204ENST00000399489 XCL1P47992 114 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 ZNF816Q0VGE8 651 aaPredicted RBP2.57□□□□□ -2
HMGB1-204ENST00000399489 ATP11AUNQ6ZP68 121 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 Q8NDZ9 215 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 CLEC2BQ92478 149 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 FGF13Q92913 245 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 IMMP2LQ96T52 175 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 MYH7BA7E2Y1 1941 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 COL1A2P08123 1366 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 ALPK3Q96L96 1907 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 DNAH14Q0VDD8 3507 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 MUC6Q6W4X9 2439 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 BDP1A6H8Y1 2624 aa2.57□□□□□ -2
HMGB1-204ENST00000399489 TRBV7-7A0A0K0K1E9 115 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 K7EM74 188 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 SDCBPO00560 298 aaPredicted RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 ZNF737O75373 536 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms