RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 RNASE4P34096 147 aaKnown RBP9.59□□□□□ -0.87
SHMT1-205ENST00000395684 SVIPQ8NHG7 77 aa9.59□□□□□ -0.87
SHMT1-205ENST00000395684 FAM19A4Q96LR4 140 aa9.59□□□□□ -0.87
SHMT1-205ENST00000395684 MGPP08493 103 aa9.59□□□□□ -0.87
SHMT1-205ENST00000395684 RNASE3P12724 160 aaKnown RBP9.59□□□□□ -0.87
SHMT1-205ENST00000395684 BRD3OSQ6XYD6 125 aa9.59□□□□□ -0.87
SHMT1-205ENST00000395684 HIVEP3Q5T1R4 2406 aa9.59□□□□□ -0.87
SHMT1-205ENST00000395684 IGKV3-7A0A075B6H7 116 aa9.59□□□□□ -0.88
SHMT1-205ENST00000395684 PRSS29PA6NIE9 313 aa9.59□□□□□ -0.88
SHMT1-205ENST00000395684 F8W1H4 67 aa9.59□□□□□ -0.88
SHMT1-205ENST00000395684 NDUFA4O00483 81 aa9.59□□□□□ -0.88
SHMT1-205ENST00000395684 CRIP2P52943 208 aaPredicted RBP9.59□□□□□ -0.88
SHMT1-205ENST00000395684 CYSLTR1Q9Y271 337 aa9.59□□□□□ -0.88
SHMT1-205ENST00000395684 IGHV3-11P01762 117 aa9.58□□□□□ -0.88
SHMT1-205ENST00000395684 LGALS1P09382 135 aaKnown RBP9.58□□□□□ -0.88
SHMT1-205ENST00000395684 RPL11P62913 178 aaKnown RBP9.58□□□□□ -0.88
SHMT1-205ENST00000395684 SPANXB1Q9NS25 103 aaPredicted RBP9.58□□□□□ -0.88
SHMT1-205ENST00000395684 CFAP46Q8IYW2 2715 aa9.58□□□□□ -0.88
SHMT1-205ENST00000395684 A0A1B0GWB2 263 aa9.58□□□□□ -0.88
SHMT1-205ENST00000395684 RRN3P1Q2M238 152 aa9.58□□□□□ -0.88
SHMT1-205ENST00000395684 USP24Q9UPU5 2620 aa9.58□□□□□ -0.88
SHMT1-205ENST00000395684 LINC01619G3V211 115 aa9.57□□□□□ -0.88
SHMT1-205ENST00000395684 PRADC1Q9BSG0 188 aa9.57□□□□□ -0.88
SHMT1-205ENST00000395684 LCNL1Q6ZST4 164 aa9.57□□□□□ -0.88
SHMT1-205ENST00000395684 SH2D6Q7Z4S9 175 aa9.57□□□□□ -0.88
SHMT1-205ENST00000395684 APRG1Q8IVJ8 170 aa9.57□□□□□ -0.88
SHMT1-205ENST00000395684 MTURNQ8N3F0 131 aa9.57□□□□□ -0.88
SHMT1-205ENST00000395684 SPTAN1Q13813 2472 aaKnown RBP9.56□□□□□ -0.88
SHMT1-205ENST00000395684 DEFB104AQ8WTQ1 72 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 ABCA2Q9BZC7 2435 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 IGHV1-69DA0A0B4J2H0 117 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 DUSP14O95147 198 aaKnown RBP9.56□□□□□ -0.88
SHMT1-205ENST00000395684 IGHV1-69P01742 117 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 CRYGDP07320 174 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 MED14OSP0DP75 135 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 LINC00315P59091 139 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 ETDBQ3ZM63 59 aa9.56□□□□□ -0.88
SHMT1-205ENST00000395684 MORN3Q6PF18 240 aaPredicted RBP9.56□□□□□ -0.88
SHMT1-205ENST00000395684 IGSF10Q6WRI0 2623 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 UCNP55089 124 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 LY6EQ16553 131 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 PLEKHB2Q96CS7 222 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 PRO0461Q9UI25 63 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 KIF25-AS1Q9Y6Z4 181 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 MUC4Q99102 2169 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 TSHBP01222 138 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 SRD5A1P18405 259 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 POM121L12Q8N7R1 296 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 RHPN1-AS1Q9BWJ2 59 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 JPT2Q9H910 190 aa9.55□□□□□ -0.88
SHMT1-205ENST00000395684 HOXA3O43365 443 aaPredicted RBP9.54□□□□□ -0.88
SHMT1-205ENST00000395684 COX6B1P14854 86 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 Q6ZS46 218 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 KLHL30-AS1Q8NEE0 82 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 ZNF815PA8K554 130 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 C19orf84I3L1E1 186 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 IGHV4-39P01824 125 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 EDN2P20800 178 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 BLCAPP62952 87 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 GAGE13Q4V321 117 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 CLEC2AQ6UVW9 174 aa9.54□□□□□ -0.88
SHMT1-205ENST00000395684 EMP1P54849 157 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 USMG5Q96IX5 58 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 TSSC4Q9Y5U2 329 aaPredicted RBP9.53□□□□□ -0.88
SHMT1-205ENST00000395684 NXPH4O95158 308 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 IGHG2P01859 326 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 IGHV4-38-2P0DP08 117 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 PF4V1P10720 104 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 SCGB2A2Q13296 93 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 CD300EQ496F6 205 aaPredicted RBP9.53□□□□□ -0.88
SHMT1-205ENST00000395684 WFDC12Q8WWY7 111 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 SPAG8Q99932 426 aaPredicted RBP9.53□□□□□ -0.88
SHMT1-205ENST00000395684 GTSF1LQ9H1H1 148 aa9.53□□□□□ -0.88
SHMT1-205ENST00000395684 IGLV4-69A0A075B6H9 119 aa9.52□□□□□ -0.88
SHMT1-205ENST00000395684 C11orf86A6NJI1 115 aa9.52□□□□□ -0.88
SHMT1-205ENST00000395684 PPP1R17O96001 155 aa9.52□□□□□ -0.88
SHMT1-205ENST00000395684 PGPEP1Q9NXJ5 209 aa9.52□□□□□ -0.88
SHMT1-205ENST00000395684 TP53TG1Q9Y2A0 90 aa9.52□□□□□ -0.88
SHMT1-205ENST00000395684 IGHV4OR15-8A0A075B7B6 117 aa9.52□□□□□ -0.89
SHMT1-205ENST00000395684 A0A087WW49 117 aa9.52□□□□□ -0.89
SHMT1-205ENST00000395684 TRBV7-9A0A0J9YWB2 115 aa9.52□□□□□ -0.89
SHMT1-205ENST00000395684 IGIPA6NJ69 53 aa9.52□□□□□ -0.89
SHMT1-205ENST00000395684 AZU1P20160 251 aa9.52□□□□□ -0.89
SHMT1-205ENST00000395684 SCGB1D4Q6XE38 83 aa9.52□□□□□ -0.89
SHMT1-205ENST00000395684 IGHV4-61A0A0C4DH41 118 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 GAGE12HA6NDE8 117 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 KLLNB2CW77 178 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 H3BUX3 64 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 INSL3P51460 131 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 POLR2KP53803 58 aaKnown RBP9.51□□□□□ -0.89
SHMT1-205ENST00000395684 RPL39P62891 51 aaKnown RBP9.51□□□□□ -0.89
SHMT1-205ENST00000395684 SAMD13Q5VXD3 122 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 ZFP2Q6ZN57 461 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 A0A087WWL8 130 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 BRI3O95415 125 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 SUMO4Q6EEV6 95 aa9.51□□□□□ -0.89
SHMT1-205ENST00000395684 MAP1AP78559 2803 aaPredicted RBP9.51□□□□□ -0.89
SHMT1-205ENST00000395684 LINC01549A6NIU2 74 aa9.5□□□□□ -0.89
SHMT1-205ENST00000395684 SRSF9Q13242 221 aaKnown RBP eCLIP9.5□□□□□ -0.89
SHMT1-205ENST00000395684 LY6DQ14210 128 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms