RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 UNQ9165/PRO28630Q6UXU0 137 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 RASL10AQ92737 203 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 FAM223BA6NKX1 122 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 F8VRH5 84 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 H7C1H1 209 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 ARL3P36405 182 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 DEFB1P60022 68 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 FAM223AQ8IWN6 122 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 ATP6V0BQ99437 205 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 KLK15Q9H2R5 256 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 MOB4Q9Y3A3 225 aa13.9□□□□□ -0.18
PCDHA1-202ENST00000394633 E9PLD3 99 aa13.89□□□□□ -0.19
PCDHA1-202ENST00000394633 TRBV12-3P01733 135 aa13.89□□□□□ -0.19
PCDHA1-202ENST00000394633 SUMO2P61956 95 aaKnown RBP13.89□□□□□ -0.19
PCDHA1-202ENST00000394633 RPL39LQ96EH5 51 aaKnown RBP13.89□□□□□ -0.19
PCDHA1-202ENST00000394633 LINC00477Q96M19 166 aa13.89□□□□□ -0.19
PCDHA1-202ENST00000394633 ITPR2Q14571 2701 aa13.89□□□□□ -0.19
PCDHA1-202ENST00000394633 IGHV3OR16-10A0A075B7F0 116 aa13.88□□□□□ -0.19
PCDHA1-202ENST00000394633 IGLL5B9A064 214 aa13.88□□□□□ -0.19
PCDHA1-202ENST00000394633 ORMDL2Q53FV1 153 aa13.88□□□□□ -0.19
PCDHA1-202ENST00000394633 TOMM6Q96B49 74 aa13.88□□□□□ -0.19
PCDHA1-202ENST00000394633 SOCS3O14543 225 aa13.88□□□□□ -0.19
PCDHA1-202ENST00000394633 SCGB3A1Q96QR1 104 aa13.88□□□□□ -0.19
PCDHA1-202ENST00000394633 IGHV4-30-2A0A087WSY4 118 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 TRAV21A0A0B4J279 112 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 IGHV4-61A0A0C4DH41 118 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 RNF223E7ERA6 249 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 CRIP2P52943 208 aaPredicted RBP13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 C12orf74Q32Q52 190 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 OR10J6PQ8NGY7 276 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 DPH3P1Q9H4G8 78 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 CHTOPQ9Y3Y2 248 aaKnown RBP13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 TRBV7-3A0A075B6L6 115 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 ANXA2RQ3ZCQ2 193 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 C14orf178Q8N769 122 aaPredicted RBP13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 NEXN-AS1Q8NBZ9 246 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 C10orf105Q8TEF2 133 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 C20orf78Q9BR46 151 aa13.87□□□□□ -0.19
PCDHA1-202ENST00000394633 OVOL1O14753 267 aa13.86□□□□□ -0.19
PCDHA1-202ENST00000394633 SLC25A16P16260 332 aa13.86□□□□□ -0.19
PCDHA1-202ENST00000394633 S100A4P26447 101 aaKnown RBP13.86□□□□□ -0.19
PCDHA1-202ENST00000394633 HIST1H4GQ99525 98 aa13.86□□□□□ -0.19
PCDHA1-202ENST00000394633 TEX48A0A1B0GUV7 120 aa13.86□□□□□ -0.19
PCDHA1-202ENST00000394633 ASIPP42127 132 aa13.86□□□□□ -0.19
PCDHA1-202ENST00000394633 RPL24P83731 157 aaKnown RBP13.86□□□□□ -0.19
PCDHA1-202ENST00000394633 UNC79Q9P2D8 2635 aa13.85□□□□□ -0.19
PCDHA1-202ENST00000394633 HECTD1Q9ULT8 2610 aa13.85□□□□□ -0.19
PCDHA1-202ENST00000394633 CCDC168Q8NDH2 2452 aa13.85□□□□□ -0.19
PCDHA1-202ENST00000394633 ZNF479Q96JC4 524 aa13.85□□□□□ -0.19
PCDHA1-202ENST00000394633 PHLDA3Q9Y5J5 127 aa13.85□□□□□ -0.19
PCDHA1-202ENST00000394633 NDUFA4O00483 81 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 CLEC2AQ6UVW9 174 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 FOXI2Q6ZQN5 318 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 FAM19A4Q96LR4 140 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 PIMREGQ9BSJ6 248 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 MYMXA0A1B0GTQ4 84 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 OR11H12B2RN74 326 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 MGPP08493 103 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 OR11H1Q8NG94 326 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 OR11H2Q8NH07 326 aa13.84□□□□□ -0.19
PCDHA1-202ENST00000394633 F6UB75 175 aa13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 LINC01619G3V211 115 aa13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 RNASE4P34096 147 aaKnown RBP13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 BAALCQ8WXS3 180 aa13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 MUC4Q99102 2169 aa13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 GNRH2O43555 120 aa13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 MED14OSP0DP75 135 aa13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 C2orf66Q6UXQ4 117 aa13.83□□□□□ -0.2
PCDHA1-202ENST00000394633 BRD3OSQ6XYD6 125 aa13.82□□□□□ -0.2
PCDHA1-202ENST00000394633 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.82□□□□□ -0.2
PCDHA1-202ENST00000394633 CREBBPQ92793 2442 aa13.82□□□□□ -0.2
PCDHA1-202ENST00000394633 RNASE3P12724 160 aaKnown RBP13.82□□□□□ -0.2
PCDHA1-202ENST00000394633 IGHV1-69DA0A0B4J2H0 117 aa13.81□□□□□ -0.2
PCDHA1-202ENST00000394633 IGHV1-69P01742 117 aa13.81□□□□□ -0.2
PCDHA1-202ENST00000394633 LGALS1P09382 135 aaKnown RBP13.81□□□□□ -0.2
PCDHA1-202ENST00000394633 WFDC2Q14508 124 aa13.81□□□□□ -0.2
PCDHA1-202ENST00000394633 APRG1Q8IVJ8 170 aa13.81□□□□□ -0.2
PCDHA1-202ENST00000394633 A0A1B0GWB2 263 aa13.8□□□□□ -0.2
PCDHA1-202ENST00000394633 IGHV3-11P01762 117 aa13.8□□□□□ -0.2
PCDHA1-202ENST00000394633 RPL11P62913 178 aaKnown RBP13.8□□□□□ -0.2
PCDHA1-202ENST00000394633 PRSS29PA6NIE9 313 aa13.8□□□□□ -0.2
PCDHA1-202ENST00000394633 NDUFS8O00217 210 aa13.8□□□□□ -0.2
PCDHA1-202ENST00000394633 RRN3P1Q2M238 152 aa13.8□□□□□ -0.2
PCDHA1-202ENST00000394633 PDZD2O15018 2839 aa13.8□□□□□ -0.2
PCDHA1-202ENST00000394633 IGKV3-7A0A075B6H7 116 aa13.79□□□□□ -0.2
PCDHA1-202ENST00000394633 F8W1H4 67 aa13.79□□□□□ -0.2
PCDHA1-202ENST00000394633 PRADC1Q9BSG0 188 aa13.79□□□□□ -0.2
PCDHA1-202ENST00000394633 CYSLTR1Q9Y271 337 aa13.79□□□□□ -0.2
PCDHA1-202ENST00000394633 TMEM238C9JI98 176 aa13.79□□□□□ -0.2
PCDHA1-202ENST00000394633 H3BMG7 143 aa13.79□□□□□ -0.2
PCDHA1-202ENST00000394633 SPANXB1Q9NS25 103 aaPredicted RBP13.79□□□□□ -0.2
PCDHA1-202ENST00000394633 LY6EQ16553 131 aa13.78□□□□□ -0.2
PCDHA1-202ENST00000394633 POM121L12Q8N7R1 296 aa13.78□□□□□ -0.2
PCDHA1-202ENST00000394633 CSPG4Q6UVK1 2322 aa13.78□□□□□ -0.2
PCDHA1-202ENST00000394633 AMTNQ6UX39 209 aa13.78□□□□□ -0.2
PCDHA1-202ENST00000394633 KIF25-AS1Q9Y6Z4 181 aa13.78□□□□□ -0.2
PCDHA1-202ENST00000394633 ITPR3Q14573 2671 aa13.77□□□□□ -0.2
PCDHA1-202ENST00000394633 AKAP9Q99996 3911 aa13.77□□□□□ -0.2
PCDHA1-202ENST00000394633 NXPH4O95158 308 aa13.77□□□□□ -0.21
PCDHA1-202ENST00000394633 USMG5Q96IX5 58 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms