RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 LINC00173Q6ZV60 143 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 OTORQ9NRC9 128 aa7.89□□□□□ -1.15
COL6A3-205ENST00000392004 SNAI2O43623 268 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 SEC11AP67812 179 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 PRSS3P2Q8NHM4 247 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 TMEM190Q8WZ59 177 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 MCRIP2Q9BUT9 160 aaKnown RBP7.88□□□□□ -1.15
COL6A3-205ENST00000392004 TMEM238C9JI98 176 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 DEFB135Q30KP9 77 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 TMEM97Q5BJF2 176 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 SAMD13Q5VXD3 122 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 C9orf139Q6ZV77 190 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 SPATA12Q7Z6I5 190 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 VGLL1Q99990 258 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 AGRNO00468 2067 aa7.88□□□□□ -1.15
COL6A3-205ENST00000392004 IGHV3-16A0A0C4DH30 117 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 TCTAP57738 103 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 PLP1P60201 277 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 ZFHX3Q15911 3703 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 TMEM262E9PQX1 116 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 DUSP14O95147 198 aaKnown RBP7.87□□□□□ -1.15
COL6A3-205ENST00000392004 TCRAP04437 139 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 IGF1P05019 195 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 FAM167A-AS1Q96KT0 104 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 SCRT2Q9NQ03 307 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 TRAV8-6A0A0B4J262 113 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 CRYGCP07315 174 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 EBI3Q14213 229 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 PATE2Q6UY27 113 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 FAM110AQ9BQ89 295 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 HRNRQ86YZ3 2850 aaPredicted RBP7.87□□□□□ -1.15
COL6A3-205ENST00000392004 A0A096LPF7 62 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 ZNF138P52744 262 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 KRTAP24-1Q3LI83 254 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 AP5S1Q9NUS5 200 aa7.87□□□□□ -1.15
COL6A3-205ENST00000392004 FABP5P3A8MUU1 101 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 CRXO43186 299 aaPredicted RBP7.86□□□□□ -1.15
COL6A3-205ENST00000392004 C9orf66Q5T8R8 295 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 SHISA2Q6UWI4 295 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 TRGV4A0A0C4DH28 118 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 A0A1B0GXF2 115 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 ASIPP42127 132 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 RIGQ13278 110 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 OR10AG1Q8NH19 301 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 FBN2P35556 2912 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 NBEAL2Q6ZNJ1 2754 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 FAM231BA6NCW3 169 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 EGR2P11161 476 aaPredicted RBP7.86□□□□□ -1.15
COL6A3-205ENST00000392004 Q8N6K4 173 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 FER1L6-AS1Q8NA97 138 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 OR8A1Q8NGG7 326 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 FMC1Q96HJ9 113 aa7.86□□□□□ -1.15
COL6A3-205ENST00000392004 H3BUT2 72 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 COX8AP10176 69 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 C4orf3Q8WVX3 66 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 C8orf49Q96NF6 230 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 TRBV19A0A075B6N1 114 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 PRAC2D3DTV9 90 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 BUB3O43684 328 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 MYCNOSP40205 109 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 ZNF415Q09FC8 603 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 SPXQ9BT56 116 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 ZNF256Q9Y2P7 627 aaPredicted RBP7.85□□□□□ -1.15
COL6A3-205ENST00000392004 H3BUA1 57 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 CRYGBP07316 175 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 CT83Q5H943 113 aa7.85□□□□□ -1.15
COL6A3-205ENST00000392004 A0A087WWL8 130 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 GAGE7O76087 117 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 GAGE12FP0CL80 117 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 GAGE12GP0CL81 117 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 GAGE12IP0CL82 117 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 PSMB8P28062 276 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 FXYD5Q96DB9 178 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 URB1-AS1Q96HZ7 61 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 FBLL1A6NHQ2 334 aaKnown RBP7.84□□□□□ -1.15
COL6A3-205ENST00000392004 CKS2P33552 79 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 OR2K2Q8NGT1 345 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 RAB37Q96AX2 223 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 H3BRN7 92 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 GFRA4Q9GZZ7 299 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 ZNF492Q9P255 531 aa7.84□□□□□ -1.15
COL6A3-205ENST00000392004 TRAV21A0A0B4J279 112 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 FCER1GP30273 86 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 A0A1B0GUT8 65 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 F5H768 121 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 KRTAP1-3Q8IUG1 177 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 SYT8Q8NBV8 401 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 C9orf118A6NHY6 69 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 H3BRM9 83 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 NAA38Q9BRA0 125 aaKnown RBP7.83□□□□□ -1.16
COL6A3-205ENST00000392004 SMAD5-AS1Q9Y6J3 95 aa7.83□□□□□ -1.16
COL6A3-205ENST00000392004 LINC01545Q5VT33 79 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 NDUFA11Q86Y39 141 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 MUC4Q99102 2169 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 INSP01308 110 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 FABP2P12104 132 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 THAP8Q8NA92 274 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 GTSF1Q8WW33 167 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 SPCS1Q9Y6A9 102 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 TMEM213A2RRL7 107 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms