RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 C14orf144Q96I85 54 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 VAMP8Q9BV40 100 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 LENEPQ9Y5L5 61 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 NBEAL1Q6ZS30 2694 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 IGHV1-24A0A0C4DH33 117 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 PMCHL1Q16048 86 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 AMN1Q8IY45 258 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 OR10J6PQ8NGY7 276 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 LINC00477Q96M19 166 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 NDUFAF3Q9BU61 184 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 C11orf21Q9P2W6 132 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 U3KQK5 164 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 CMYA5Q8N3K9 4069 aa7.57□□□□□ -1.2
VPS53-202ENST00000389040 D6R8Y8 96 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 RAB4AP20338 218 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 EDN2P20800 178 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 EBLN2Q6P2I7 272 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 ORMDL3Q8N138 153 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 MS4A6AQ9H2W1 248 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 PAM16Q9Y3D7 125 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 IGKV3-7A0A075B6H7 116 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 BTF3P20290 206 aaKnown RBP7.56□□□□□ -1.2
VPS53-202ENST00000389040 MRPL51Q4U2R6 128 aaKnown RBP7.56□□□□□ -1.2
VPS53-202ENST00000389040 C20orf144Q9BQM9 153 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 TMEM191AQ9H0A3 160 aa7.56□□□□□ -1.2
VPS53-202ENST00000389040 FBN3Q75N90 2809 aa7.55□□□□□ -1.2
VPS53-202ENST00000389040 PRR9Q5T870 116 aa7.55□□□□□ -1.2
VPS53-202ENST00000389040 Q8N1Y9 231 aa7.55□□□□□ -1.2
VPS53-202ENST00000389040 DCANP1Q8TF63 244 aa7.55□□□□□ -1.2
VPS53-202ENST00000389040 PRELID3AQ96N28 172 aa7.55□□□□□ -1.2
VPS53-202ENST00000389040 LEPROTL1O95214 131 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 OR5AL1P0C617 328 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 DEFB1P60022 68 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 SNRPD3P62318 126 aaKnown RBP7.54□□□□□ -1.2
VPS53-202ENST00000389040 OR8A1Q8NGG7 326 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 PRSS3P2Q8NHM4 247 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 AP5S1Q9NUS5 200 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 MSRB1Q9NZV6 116 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 SELENOKQ9Y6D0 94 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 K7EQG2 157 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 CKS2P33552 79 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 ID1P41134 155 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 Q6ZQT7 251 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 FA2HQ7L5A8 372 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 ZFAND2AQ8N6M9 145 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 FAM19A4Q96LR4 140 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 TMEM70Q9BUB7 260 aa7.54□□□□□ -1.2
VPS53-202ENST00000389040 NOTCH1P46531 2555 aa7.53□□□□□ -1.2
VPS53-202ENST00000389040 TRAV21A0A0B4J279 112 aa7.53□□□□□ -1.2
VPS53-202ENST00000389040 TRBV7-9A0A0J9YWB2 115 aa7.53□□□□□ -1.2
VPS53-202ENST00000389040 OR11H12B2RN74 326 aa7.53□□□□□ -1.2
VPS53-202ENST00000389040 F6UB75 175 aa7.53□□□□□ -1.2
VPS53-202ENST00000389040 K7EIL1 84 aa7.53□□□□□ -1.2
VPS53-202ENST00000389040 IFI27P40305 119 aaPredicted RBP7.53□□□□□ -1.2
VPS53-202ENST00000389040 RNF185Q96GF1 192 aa7.53□□□□□ -1.2
VPS53-202ENST00000389040 LOC389332A0A1B0GUA5 103 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 J3KRW8 73 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 CRXO43186 299 aaPredicted RBP7.52□□□□□ -1.2
VPS53-202ENST00000389040 SPATA45Q537H7 98 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 LINC00173Q6ZV60 143 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 OR10AG1Q8NH19 301 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 MRAPQ8TCY5 172 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 C19orf73Q9NVV2 129 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 HSPB8Q9UJY1 196 aa7.52□□□□□ -1.2
VPS53-202ENST00000389040 SMKR1H3BMG3 65 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 SYS1-DBNDD2H3BUS1 97 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 SNAI2O43623 268 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 NCR2O95944 276 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 PPBPP02775 128 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 CD7P09564 240 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 CACNG7P62955 275 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 SPATA12Q7Z6I5 190 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 APRG1Q8IVJ8 170 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 MIEN1Q9BRT3 115 aa7.52□□□□□ -1.21
VPS53-202ENST00000389040 MEGF8Q7Z7M0 2845 aa7.51□□□□□ -1.21
VPS53-202ENST00000389040 IGHV4-4A0A075B6R2 117 aa7.51□□□□□ -1.21
VPS53-202ENST00000389040 NPYP01303 97 aa7.51□□□□□ -1.21
VPS53-202ENST00000389040 RNASE4P34096 147 aaKnown RBP7.51□□□□□ -1.21
VPS53-202ENST00000389040 WFDC3Q8IUB2 231 aa7.51□□□□□ -1.21
VPS53-202ENST00000389040 ATOH7Q8N100 152 aa7.51□□□□□ -1.21
VPS53-202ENST00000389040 MAP1LC3CQ9BXW4 147 aa7.51□□□□□ -1.21
VPS53-202ENST00000389040 LAMTOR2Q9Y2Q5 125 aa7.51□□□□□ -1.21
VPS53-202ENST00000389040 C20orf202A1L168 122 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 H3BVH4 76 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 IGHV4-30-4P0DP06 118 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 ODF3L2Q3SX64 289 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 DEFB121Q5J5C9 76 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 ZNF705AQ6ZN79 300 aaPredicted RBP7.5□□□□□ -1.21
VPS53-202ENST00000389040 SMIM15Q7Z3B0 74 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 TRAV9-2A0A087WT02 112 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 EVI2AP22794 236 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 TFPI2P48307 235 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 LBHQ53QV2 105 aaPredicted RBP7.5□□□□□ -1.21
VPS53-202ENST00000389040 SPANXN1Q5VSR9 72 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 CLUHP3Q96NS8 147 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 B9D2Q9BPU9 175 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 MAP1LC3AQ9H492 121 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 MAP6D1Q9H9H5 199 aa7.5□□□□□ -1.21
VPS53-202ENST00000389040 TIMM8BQ9Y5J9 83 aaPredicted RBP7.5□□□□□ -1.21
VPS53-202ENST00000389040 SORL1Q92673 2214 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms