RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NUP210LQ5VU65 1888 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 IGHV4OR15-8A0A075B7B6 117 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 A0A087WW49 117 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 A0A1W2PRX2 142 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 IGLV3-21P80748 117 aaPredicted RBP6.95□□□□□ -1.3
LIG3-202ENST00000378526 CRIPAKQ8N1N5 446 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 TRBV27A0A0K0K1C4 114 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 FOXF2Q12947 444 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 ATG2AQ2TAZ0 1938 aa6.95□□□□□ -1.3
LIG3-202ENST00000378526 TOMM6Q96B49 74 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 RHPN1-AS1Q9BWJ2 59 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 FGF23Q9GZV9 251 aaPredicted RBP6.94□□□□□ -1.3
LIG3-202ENST00000378526 ZNF831Q5JPB2 1677 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 CGB7P0DN87 165 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 PRR4Q16378 134 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 MIAQ16674 131 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 Q8N9L7 120 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 SPAG11BQ08648 103 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 CSPG4Q6UVK1 2322 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 LTBRP36941 435 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 XCL1P47992 114 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 SPATA12Q7Z6I5 190 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 TRAV7A0A075B6U4 112 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 SRRM5B3KS81 715 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 MIFP14174 115 aa6.94□□□□□ -1.3
LIG3-202ENST00000378526 IGHV3OR16-10A0A075B7F0 116 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 CGB3P0DN86 165 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 DEFB130BP0DP73 79 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 DEFB130AP0DP74 79 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 RPL35AP18077 110 aaKnown RBP6.93□□□□□ -1.3
LIG3-202ENST00000378526 VOPP1Q96AW1 172 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 BUB1B-PAK6H3BSN5 160 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 APOC4P55056 127 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 FAM222AQ5U5X8 452 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 TCF20Q9UGU0 1960 aaKnown RBP6.93□□□□□ -1.3
LIG3-202ENST00000378526 NRXN2Q9P2S2 1712 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 DEFB112Q30KQ8 113 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.93□□□□□ -1.3
LIG3-202ENST00000378526 IGHV1-69P01742 117 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 VPREB3Q9UKI3 123 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 IGKV2D-26A0A0A0MRZ7 120 aa6.93□□□□□ -1.3
LIG3-202ENST00000378526 TM2D2Q9BX73 214 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 NOTCH4Q99466 2003 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 H3BRN7 92 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 FXYD5Q96DB9 178 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 SNURFQ9Y675 71 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 K7EN84 100 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 QRFPP83859 136 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 MBD3L2Q8NHZ7 208 aaPredicted RBP6.92□□□□□ -1.3
LIG3-202ENST00000378526 VMO1Q7Z5L0 202 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 NDUFA4L2Q9NRX3 87 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 GVINP1Q7Z2Y8 2422 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 IGHV4-4A0A075B6R2 117 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 TIRAPP58753 221 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 LINC00526Q96FQ7 95 aa6.92□□□□□ -1.3
LIG3-202ENST00000378526 SEM1Q6ZVN7 128 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 CD59P13987 128 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 ODF1Q14990 250 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 LINC00473A8K010 186 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 TRBV7-3A0A075B6L6 115 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 C5orf63A6NC05 138 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 DSCR9P59020 149 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 UBE2D2P62837 147 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 SPINK13Q1W4C9 94 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 ASPHD1Q5U4P2 390 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 PIP4P2Q8N4L2 257 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 WFDC10AQ9H1F0 79 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 CELA2AP08217 269 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 KIR2DL5BQ8NHK3 375 aa6.91□□□□□ -1.3
LIG3-202ENST00000378526 IGHV1-2P23083 117 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 COX7BP24311 80 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 DEFB124Q8NES8 71 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 TMEM178BH3BS89 294 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 ZNF726P1Q15940 193 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 IGKV1D-43A0A0B4J1Z2 117 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 IGHV3-16A0A0C4DH30 117 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 NDUFA4O00483 81 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 PAPPA2Q9BXP8 1791 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 TRBV30A0A0K0K1B3 111 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 UBE2D4Q9Y2X8 147 aa6.9□□□□□ -1.3
LIG3-202ENST00000378526 MGAMO43451 1857 aa6.9□□□□□ -1.31
LIG3-202ENST00000378526 FAM120AOSQ5T036 256 aa6.9□□□□□ -1.31
LIG3-202ENST00000378526 CLPSP04118 112 aa6.9□□□□□ -1.31
LIG3-202ENST00000378526 KLHL30-AS1Q8NEE0 82 aa6.9□□□□□ -1.31
LIG3-202ENST00000378526 LIMD2Q9BT23 127 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 RNF114Q9Y508 228 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 C10orf55Q5SWW7 151 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 TMEM92Q6UXU6 159 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 DAND5Q8N907 189 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 SPRY4Q9C004 299 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 DKK4Q9UBT3 224 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 IGLV3-32A0A0A0MS00 114 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 Q8N976 141 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 CAMK2N2Q96S95 79 aa6.89□□□□□ -1.31
LIG3-202ENST00000378526 NDUFA1O15239 70 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 RNASE13Q5GAN3 156 aaKnown RBP6.88□□□□□ -1.31
LIG3-202ENST00000378526 IGHV3-38A0A0C4DH36 116 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 ESM1Q9NQ30 184 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 IGKV1-39P01597 117 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 IGKV1D-39P04432 117 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms