RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RASL10AQ92737 203 aa9.21□□□□□ -0.93
CLIP3-201ENST00000360535 PSMG3-AS1Q96PY0 264 aa9.21□□□□□ -0.93
CLIP3-201ENST00000360535 CLUHP3Q96NS8 147 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 SMPXQ9UHP9 88 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 UTP20O75691 2785 aaKnown RBP9.21□□□□□ -0.94
CLIP3-201ENST00000360535 CACNA1AO00555 2505 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 C12orf74Q32Q52 190 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 C2orf66Q6UXQ4 117 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 KLHL30-AS1Q8NEE0 82 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 SVIPQ8NHG7 77 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 MOB4Q9Y3A3 225 aa9.21□□□□□ -0.94
CLIP3-201ENST00000360535 TRAV21A0A0B4J279 112 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 H3BUX3 64 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 H7C1H1 209 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 IGHV4-38-2P0DP08 117 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 TMEM95Q3KNT9 176 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 ETDBQ3ZM63 59 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 C9orf139Q6ZV77 190 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 ZFAND2AQ8N6M9 145 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 IGLL5B9A064 214 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 F8VRH5 84 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 AZU1P20160 251 aa9.2□□□□□ -0.94
CLIP3-201ENST00000360535 SRSF9Q13242 221 aaKnown RBP eCLIP9.2□□□□□ -0.94
CLIP3-201ENST00000360535 DPH3P1Q9H4G8 78 aa9.19□□□□□ -0.94
CLIP3-201ENST00000360535 HIGD1BQ9P298 99 aa9.19□□□□□ -0.94
CLIP3-201ENST00000360535 USP9XQ93008 2570 aaPredicted RBP9.19□□□□□ -0.94
CLIP3-201ENST00000360535 TGFAP01135 160 aa9.19□□□□□ -0.94
CLIP3-201ENST00000360535 GPHB5Q86YW7 130 aa9.19□□□□□ -0.94
CLIP3-201ENST00000360535 RHPN1-AS1Q9BWJ2 59 aa9.19□□□□□ -0.94
CLIP3-201ENST00000360535 PRSS29PA6NIE9 313 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 DUSP14O95147 198 aaKnown RBP9.18□□□□□ -0.94
CLIP3-201ENST00000360535 APOMO95445 188 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 PLNP26678 52 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 CSMD2Q7Z408 3487 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 TLN2Q9Y4G6 2542 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 TRAV12-3A0A0B4J271 114 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 ZNF815PA8K554 130 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 HTN1P15515 57 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 SLC25A16P16260 332 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 LINC00477Q96M19 166 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 PRADC1Q9BSG0 188 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 MYO18BQ8IUG5 2567 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 FLNCQ14315 2725 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 ZANQ9Y493 2812 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 LOC107984156A0A0G2JMH3 177 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 RPL39P62891 51 aaKnown RBP9.18□□□□□ -0.94
CLIP3-201ENST00000360535 ORMDL2Q53FV1 153 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 ARL17AQ8IVW1 177 aa9.18□□□□□ -0.94
CLIP3-201ENST00000360535 ZNF256Q9Y2P7 627 aaPredicted RBP9.18□□□□□ -0.94
CLIP3-201ENST00000360535 TRAV12-2A0A075B6T6 113 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 IGHV4-61A0A0C4DH41 118 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 IGHV4-39P01824 125 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 PHLDA1Q8WV24 401 aaPredicted RBP9.17□□□□□ -0.94
CLIP3-201ENST00000360535 MRAP2Q96G30 205 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 U3KQE9 123 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 WNK1Q9H4A3 2382 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 MYMXA0A1B0GTQ4 84 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 LINC01546A6NGU7 62 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 CD7P09564 240 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 HLA-DRB4P13762 266 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 BAALCQ8WXS3 180 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 TM2D2Q9BX73 214 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 TSSC4Q9Y5U2 329 aaPredicted RBP9.17□□□□□ -0.94
CLIP3-201ENST00000360535 HLA-DRB4X5D2U9 266 aa9.17□□□□□ -0.94
CLIP3-201ENST00000360535 IGHV1-69DA0A0B4J2H0 117 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 IGHV1-69P01742 117 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 GNLYP22749 145 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 PIFOQ8TCI5 191 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 PLEKHB2Q96CS7 222 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 MYO9AB2RTY4 2548 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 ZNF688P0C7X2 276 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 FAM159AQ6UWV7 190 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 ITLN2Q8WWU7 325 aaPredicted RBP9.16□□□□□ -0.94
CLIP3-201ENST00000360535 MRPL16Q9NX20 251 aaKnown RBP9.16□□□□□ -0.94
CLIP3-201ENST00000360535 TP53TG1Q9Y2A0 90 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 ITPR1Q14643 2758 aa9.16□□□□□ -0.94
CLIP3-201ENST00000360535 IGHV3-64A0A075B6Q5 118 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 OVOL1O14753 267 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 TMEM170BQ5T4T1 132 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 FOXI2Q6ZQN5 318 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 MRPL53Q96EL3 112 aaKnown RBP9.15□□□□□ -0.94
CLIP3-201ENST00000360535 PGPEP1Q9NXJ5 209 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 FAM223BA6NKX1 122 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 RNASE3P12724 160 aaKnown RBP9.15□□□□□ -0.94
CLIP3-201ENST00000360535 FAM223AQ8IWN6 122 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 SIGMAR1Q99720 223 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 SETD2Q9BYW2 2564 aaPredicted RBP9.15□□□□□ -0.94
CLIP3-201ENST00000360535 PTPN13Q12923 2485 aa9.15□□□□□ -0.94
CLIP3-201ENST00000360535 LGALS1P09382 135 aaKnown RBP9.15□□□□□ -0.95
CLIP3-201ENST00000360535 TOMM6Q96B49 74 aa9.15□□□□□ -0.95
CLIP3-201ENST00000360535 DUX5Q96PT3 197 aa9.15□□□□□ -0.95
CLIP3-201ENST00000360535 C2CD3Q4AC94 2353 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 E9PLD3 99 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 HOXA3O43365 443 aaPredicted RBP9.14□□□□□ -0.95
CLIP3-201ENST00000360535 INSL3P51460 131 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 C10orf99Q6UWK7 81 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 NEXN-AS1Q8NBZ9 246 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 ZNF418Q8TF45 676 aaPredicted RBP9.14□□□□□ -0.95
CLIP3-201ENST00000360535 A0A1B0GWB2 263 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 LINC01549A6NIU2 74 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms