RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PLXNA1Q9UIW2 1896 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 WFDC9Q8NEX5 89 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 UBL5Q9BZL1 73 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 DOCK10Q96BY6 2186 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 Q6ZTI0 123 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 Q8N8P6 123 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 RMI2Q96E14 147 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 RPL37AP8A6NKH3 93 aa5.65□□□□□ -1.5
VPS13A-202ENST00000357409 GDF5OSQ5U4N7 250 aa5.65□□□□□ -1.51
VPS13A-202ENST00000357409 SLX1AQ9BQ83 275 aa5.65□□□□□ -1.51
VPS13A-202ENST00000357409 PHF3Q92576 2039 aaKnown RBP5.65□□□□□ -1.51
VPS13A-202ENST00000357409 ICE1Q9Y2F5 2266 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 FAM222AQ5U5X8 452 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 LYPD1Q8N2G4 141 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 Q8N976 141 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 MLST8Q9BVC4 326 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 K7EQD1 137 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 V9GYV3 84 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 IGKV2-28A0A075B6P5 120 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 IGKV2D-28P01615 120 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 LAMB2P55268 1798 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 YPEL3P61236 119 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-202ENST00000357409 Q6ZWC4 215 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 LY96Q9Y6Y9 160 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 SCN4AP35499 1836 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 A8MZ25 164 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 FOXI2Q6ZQN5 318 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 CLEC2BQ92478 149 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 BRCA1P38398 1863 aaKnown RBP5.64□□□□□ -1.51
VPS13A-202ENST00000357409 NUPR1O60356 82 aa5.64□□□□□ -1.51
VPS13A-202ENST00000357409 NRXN2Q9P2S2 1712 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 IGLV9-49A0A0B4J1Y8 123 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 J3QQQ9 107 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 PLA2G2AP14555 144 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 RBM3P98179 157 aaKnown RBP5.63□□□□□ -1.51
VPS13A-202ENST00000357409 ESPL1Q14674 2120 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 FAM19A1Q7Z5A9 133 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 PYGO2Q9BRQ0 406 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 NYNRINQ9P2P1 1898 aaKnown RBP5.63□□□□□ -1.51
VPS13A-202ENST00000357409 MIR7-3HGQ8N6C7 128 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 AHCTF1Q8WYP5 2266 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 DOCK8Q8NF50 2099 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 LYPD6Q86Y78 171 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 SND1-IT1Q9HBX3 110 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 ZNF492Q9P255 531 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 LRRC37AA6NMS7 1700 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 IGKV4-1P06312 121 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 SPAG11BQ08648 103 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 GREB1Q4ZG55 1949 aa5.63□□□□□ -1.51
VPS13A-202ENST00000357409 NANOS2P60321 138 aaKnown RBP5.63□□□□□ -1.51
VPS13A-202ENST00000357409 MPZP25189 248 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 TDRG1Q3Y452 100 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 FOXL2NBQ6ZUU3 175 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 CEND1Q8N111 149 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 POM121L12Q8N7R1 296 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 PATE2Q6UY27 113 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 COL6A6A6NMZ7 2263 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 IGLC7A0M8Q6 106 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 ETV2O00321 342 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-202ENST00000357409 ZFP2Q6ZN57 461 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 FBLN5Q9UBX5 448 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 TMEM263Q8WUH6 116 aaKnown RBP5.62□□□□□ -1.51
VPS13A-202ENST00000357409 MAP6D1Q9H9H5 199 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 ACYP1P07311 99 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 K7EIM0 57 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 IGLC2P0DOY2 106 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 IGLC3P0DOY3 106 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 HERVK_113P63121 156 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 PRO1854Q9UHT4 67 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 PSME4Q14997 1843 aa5.62□□□□□ -1.51
VPS13A-202ENST00000357409 C16orf54Q6UWD8 224 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 PRORYQ9H606 182 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 DLEU1O43261 78 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 BBC3Q96PG8 261 aaPredicted RBP5.61□□□□□ -1.51
VPS13A-202ENST00000357409 LRRK1Q38SD2 2015 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 TRBV24-1A0A075B6N3 115 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 C16orf74Q96GX8 76 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 X6R8D5 127 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 CRYGDP07320 174 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 MKI67P46013 3256 aaKnown RBP5.61□□□□□ -1.51
VPS13A-202ENST00000357409 HEATR1Q9H583 2144 aaKnown RBP5.61□□□□□ -1.51
VPS13A-202ENST00000357409 I3L2K1 104 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 PIK3CD-AS1Q5SR53 167 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 WNK3Q9BYP7 1800 aa5.61□□□□□ -1.51
VPS13A-202ENST00000357409 TRAV9-1A0A075B6T8 112 aa5.6□□□□□ -1.51
VPS13A-202ENST00000357409 KIAA1671Q9BY89 1806 aa5.6□□□□□ -1.51
VPS13A-202ENST00000357409 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-202ENST00000357409 C12orf74Q32Q52 190 aa5.6□□□□□ -1.51
VPS13A-202ENST00000357409 WFDC10BQ8IUB3 73 aa5.6□□□□□ -1.51
VPS13A-202ENST00000357409 CLUHP3Q96NS8 147 aa5.6□□□□□ -1.51
VPS13A-202ENST00000357409 WDR90Q96KV7 1748 aa5.6□□□□□ -1.51
VPS13A-202ENST00000357409 C1orf147Q96MC9 270 aaPredicted RBP5.6□□□□□ -1.51
VPS13A-202ENST00000357409 WDR81Q562E7 1941 aa5.6□□□□□ -1.51
VPS13A-202ENST00000357409 A4D1N5 150 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 C1orf229Q6ZS94 237 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-202ENST00000357409 Q8TCH9 128 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 ZNF493Q6ZR52 646 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 Q8NFD4 153 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 TICRRQ7Z2Z1 1910 aa5.59□□□□□ -1.51
VPS13A-202ENST00000357409 XIRP2A4UGR9 3374 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms