RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 C1orf229Q6ZS94 237 aaPredicted RBP11.51□□□□□ -0.57
COL17A1-201ENST00000353479 PLA2G2EQ9NZK7 142 aa11.51□□□□□ -0.57
COL17A1-201ENST00000353479 PRAC2D3DTV9 90 aa11.5□□□□□ -0.57
COL17A1-201ENST00000353479 GHRHP01286 108 aa11.5□□□□□ -0.57
COL17A1-201ENST00000353479 CDSNQ15517 529 aa11.5□□□□□ -0.57
COL17A1-201ENST00000353479 GATD1Q8NB37 220 aa11.5□□□□□ -0.57
COL17A1-201ENST00000353479 RHOHQ15669 191 aa11.5□□□□□ -0.57
COL17A1-201ENST00000353479 IGHV1-24A0A0C4DH33 117 aa11.49□□□□□ -0.57
COL17A1-201ENST00000353479 NAA38Q9BRA0 125 aaKnown RBP11.49□□□□□ -0.57
COL17A1-201ENST00000353479 SRSF2Q01130 221 aaKnown RBP11.49□□□□□ -0.57
COL17A1-201ENST00000353479 BRWD1-AS2P59051 145 aa11.49□□□□□ -0.57
COL17A1-201ENST00000353479 MEGF9Q9H1U4 602 aa11.49□□□□□ -0.57
COL17A1-201ENST00000353479 DEFB1P60022 68 aa11.49□□□□□ -0.57
COL17A1-201ENST00000353479 NAV2Q8IVL1 2488 aa11.48□□□□□ -0.57
COL17A1-201ENST00000353479 FSTL3O95633 263 aa11.48□□□□□ -0.57
COL17A1-201ENST00000353479 ANGP03950 147 aaKnown RBP11.48□□□□□ -0.57
COL17A1-201ENST00000353479 CLPSL2Q6UWE3 100 aa11.48□□□□□ -0.57
COL17A1-201ENST00000353479 Q6YL49 198 aa11.48□□□□□ -0.57
COL17A1-201ENST00000353479 LEPROTO15243 131 aa11.48□□□□□ -0.57
COL17A1-201ENST00000353479 RNASE13Q5GAN3 156 aaKnown RBP11.48□□□□□ -0.57
COL17A1-201ENST00000353479 CCDC168Q8NDH2 2452 aa11.48□□□□□ -0.57
COL17A1-201ENST00000353479 INAFM1C9JVW0 142 aa11.48□□□□□ -0.57
COL17A1-201ENST00000353479 SAMD5Q5TGI4 173 aa11.47□□□□□ -0.57
COL17A1-201ENST00000353479 C20orf78Q9BR46 151 aa11.47□□□□□ -0.57
COL17A1-201ENST00000353479 CD5LO43866 347 aa11.47□□□□□ -0.57
COL17A1-201ENST00000353479 TSPAN13O95857 204 aa11.47□□□□□ -0.57
COL17A1-201ENST00000353479 ADAMTSL5Q6ZMM2 481 aa11.47□□□□□ -0.57
COL17A1-201ENST00000353479 SONP18583 2426 aaKnown RBP11.47□□□□□ -0.57
COL17A1-201ENST00000353479 P0C879 139 aa11.47□□□□□ -0.57
COL17A1-201ENST00000353479 NDUFS6O75380 124 aaKnown RBP11.46□□□□□ -0.57
COL17A1-201ENST00000353479 MPV17L2Q567V2 206 aa11.46□□□□□ -0.57
COL17A1-201ENST00000353479 DLX4Q92988 240 aaPredicted RBP11.46□□□□□ -0.57
COL17A1-201ENST00000353479 C16orf74Q96GX8 76 aa11.46□□□□□ -0.57
COL17A1-201ENST00000353479 CCDC140Q96MF4 163 aa11.46□□□□□ -0.57
COL17A1-201ENST00000353479 PFN2P35080 140 aa11.46□□□□□ -0.58
COL17A1-201ENST00000353479 TMEM61Q8N0U2 210 aa11.45□□□□□ -0.58
COL17A1-201ENST00000353479 RNF152Q8N8N0 203 aa11.45□□□□□ -0.58
COL17A1-201ENST00000353479 GATA1P15976 413 aaPredicted RBP11.45□□□□□ -0.58
COL17A1-201ENST00000353479 TRAV25A0A0B4J276 109 aa11.44□□□□□ -0.58
COL17A1-201ENST00000353479 IGHG4P01861 327 aa11.44□□□□□ -0.58
COL17A1-201ENST00000353479 KLF5Q13887 457 aaPredicted RBP11.44□□□□□ -0.58
COL17A1-201ENST00000353479 ZNF664Q8N3J9 261 aa11.44□□□□□ -0.58
COL17A1-201ENST00000353479 ZNF48Q96MX3 618 aaPredicted RBP11.44□□□□□ -0.58
COL17A1-201ENST00000353479 ARHGAP21Q5T5U3 1957 aa11.44□□□□□ -0.58
COL17A1-201ENST00000353479 MSRB1Q9NZV6 116 aa11.44□□□□□ -0.58
COL17A1-201ENST00000353479 TLN1Q9Y490 2541 aaKnown RBP11.44□□□□□ -0.58
COL17A1-201ENST00000353479 IGKV1D-37A0A075B6S9 117 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 A0A1B0GV72 72 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 TTC32Q5I0X7 151 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 MRPL35Q9NZE8 188 aaKnown RBP11.43□□□□□ -0.58
COL17A1-201ENST00000353479 Q6ZQT7 251 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 C9orf47Q6ZRZ4 202 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 C11orf1Q9H5F2 150 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.43□□□□□ -0.58
COL17A1-201ENST00000353479 TRAV8-2A0A0B4J237 113 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 IGKV2-29A2NJV5 120 aaPredicted RBP11.43□□□□□ -0.58
COL17A1-201ENST00000353479 SPART-AS1P0CW21 52 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 ATXN8Q156A1 80 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 ZNF493Q6ZR52 646 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 Q6ZWC4 215 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 Q8N1Y9 231 aa11.43□□□□□ -0.58
COL17A1-201ENST00000353479 HIVEP3Q5T1R4 2406 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 IGLC2P0DOY2 106 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 ESM1Q9NQ30 184 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 DEFB135Q30KP9 77 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 POLR3KQ9Y2Y1 108 aaPredicted RBP11.42□□□□□ -0.58
COL17A1-201ENST00000353479 SUMO4Q6EEV6 95 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 RPL39LQ96EH5 51 aaKnown RBP11.42□□□□□ -0.58
COL17A1-201ENST00000353479 LY6LH3BQJ8 138 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 IGF1P05019 195 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 CENPFP49454 3210 aa11.42□□□□□ -0.58
COL17A1-201ENST00000353479 PLA2G2AP14555 144 aa11.41□□□□□ -0.58
COL17A1-201ENST00000353479 CRLF1O75462 422 aa11.41□□□□□ -0.58
COL17A1-201ENST00000353479 GYPEP15421 78 aa11.41□□□□□ -0.58
COL17A1-201ENST00000353479 DEFB4AO15263 64 aa11.41□□□□□ -0.58
COL17A1-201ENST00000353479 NXPH4O95158 308 aa11.41□□□□□ -0.58
COL17A1-201ENST00000353479 ATP5G1P05496 136 aa11.41□□□□□ -0.58
COL17A1-201ENST00000353479 RMI2Q96E14 147 aa11.41□□□□□ -0.58
COL17A1-201ENST00000353479 EIF4EBP1Q13541 118 aaPredicted RBP11.4□□□□□ -0.58
COL17A1-201ENST00000353479 SPINK8P0C7L1 97 aa11.4□□□□□ -0.59
COL17A1-201ENST00000353479 KIR3DS1Q14943 382 aa11.4□□□□□ -0.59
COL17A1-201ENST00000353479 MAJINQ3KP22 176 aa11.4□□□□□ -0.59
COL17A1-201ENST00000353479 LGALS9BQ3B8N2 356 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 LGALS9CQ6DKI2 356 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 F8VRH5 84 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 IGKV2D-24A0A075B6R9 120 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 K7EQD1 137 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 XCL1P47992 114 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 C10orf126Q8N4M7 172 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 NDUFA12Q9UI09 145 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 HERVK_113P63121 156 aa11.39□□□□□ -0.59
COL17A1-201ENST00000353479 COL5A1P20908 1838 aaPredicted RBP11.39□□□□□ -0.59
COL17A1-201ENST00000353479 LY6G6DO95868 133 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 SMAD5-AS1Q9Y6J3 95 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 NDUFA11Q86Y39 141 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 Q9HAA7 133 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 CRYGBP07316 175 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 TEX48A0A1B0GUV7 120 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 EBI3Q14213 229 aa11.38□□□□□ -0.59
COL17A1-201ENST00000353479 LAMTOR3Q9UHA4 124 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms