RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 WFDC12Q8WWY7 111 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 RPL39LQ96EH5 51 aaKnown RBP16.35■□□□□ 0.21
SHMT1-202ENST00000352886 CSTL1Q9H114 145 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 IGKV2D-26A0A0A0MRZ7 120 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 SIVA1O15304 175 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 SEC11AP67812 179 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 FAM208BQ5VWN6 2430 aa16.35■□□□□ 0.21
SHMT1-202ENST00000352886 DOPEY2Q9Y3R5 2298 aa16.34■□□□□ 0.21
SHMT1-202ENST00000352886 POLQO75417 2590 aa16.34■□□□□ 0.21
SHMT1-202ENST00000352886 DPM2O94777 84 aa16.34■□□□□ 0.21
SHMT1-202ENST00000352886 COX6B1P14854 86 aa16.34■□□□□ 0.21
SHMT1-202ENST00000352886 SAMD13Q5VXD3 122 aa16.34■□□□□ 0.21
SHMT1-202ENST00000352886 ADAMTSL5Q6ZMM2 481 aa16.33■□□□□ 0.2
SHMT1-202ENST00000352886 AP1S3Q96PC3 154 aa16.33■□□□□ 0.2
SHMT1-202ENST00000352886 PSMG4Q5JS54 123 aa16.33■□□□□ 0.2
SHMT1-202ENST00000352886 MRPL35Q9NZE8 188 aaKnown RBP16.33■□□□□ 0.2
SHMT1-202ENST00000352886 TMEM89A2RUT3 159 aa16.32■□□□□ 0.2
SHMT1-202ENST00000352886 HSD52Q0P140 79 aa16.32■□□□□ 0.2
SHMT1-202ENST00000352886 ZC2HC1BQ5TFG8 222 aa16.32■□□□□ 0.2
SHMT1-202ENST00000352886 FAM159AQ6UWV7 190 aa16.32■□□□□ 0.2
SHMT1-202ENST00000352886 C20orf78Q9BR46 151 aa16.32■□□□□ 0.2
SHMT1-202ENST00000352886 TMEM160Q9NX00 188 aa16.32■□□□□ 0.2
SHMT1-202ENST00000352886 ZFYVE26Q68DK2 2539 aa16.32■□□□□ 0.2
SHMT1-202ENST00000352886 RNF223E7ERA6 249 aa16.31■□□□□ 0.2
SHMT1-202ENST00000352886 ZNF688P0C7X2 276 aa16.31■□□□□ 0.2
SHMT1-202ENST00000352886 GTSCR1Q86UQ5 136 aa16.31■□□□□ 0.2
SHMT1-202ENST00000352886 TTTY13Q9BZ97 58 aa16.31■□□□□ 0.2
SHMT1-202ENST00000352886 VPREB3Q9UKI3 123 aa16.31■□□□□ 0.2
SHMT1-202ENST00000352886 USP24Q9UPU5 2620 aa16.31■□□□□ 0.2
SHMT1-202ENST00000352886 ZNF462Q96JM2 2506 aa16.31■□□□□ 0.2
SHMT1-202ENST00000352886 ORMDL2Q53FV1 153 aa16.3■□□□□ 0.2
SHMT1-202ENST00000352886 TRAV12-3A0A0B4J271 114 aa16.3■□□□□ 0.2
SHMT1-202ENST00000352886 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.3■□□□□ 0.2
SHMT1-202ENST00000352886 BBC3Q96PG8 261 aaPredicted RBP16.3■□□□□ 0.2
SHMT1-202ENST00000352886 A0A087WX48 190 aa16.29■□□□□ 0.2
SHMT1-202ENST00000352886 NXPH4O95158 308 aa16.29■□□□□ 0.2
SHMT1-202ENST00000352886 SYNJ2BPP57105 145 aa16.29■□□□□ 0.2
SHMT1-202ENST00000352886 AMMECR1LQ6DCA0 310 aa16.29■□□□□ 0.2
SHMT1-202ENST00000352886 CR1P17927 2039 aa16.29■□□□□ 0.2
SHMT1-202ENST00000352886 CENPEQ02224 2701 aa16.29■□□□□ 0.2
SHMT1-202ENST00000352886 TRAV8-6A0A0B4J262 113 aa16.27■□□□□ 0.2
SHMT1-202ENST00000352886 A6NDN8 102 aa16.27■□□□□ 0.2
SHMT1-202ENST00000352886 TMEM238C9JI98 176 aa16.27■□□□□ 0.2
SHMT1-202ENST00000352886 CD7P09564 240 aa16.27■□□□□ 0.2
SHMT1-202ENST00000352886 SNRPD3P62318 126 aaKnown RBP16.27■□□□□ 0.2
SHMT1-202ENST00000352886 TOMM6Q96B49 74 aa16.27■□□□□ 0.2
SHMT1-202ENST00000352886 LRRK2Q5S007 2527 aa16.27■□□□□ 0.2
SHMT1-202ENST00000352886 IGKV3-20P01619 116 aa16.27■□□□□ 0.19
SHMT1-202ENST00000352886 Q6YL49 198 aa16.27■□□□□ 0.19
SHMT1-202ENST00000352886 SCGB3A1Q96QR1 104 aa16.27■□□□□ 0.19
SHMT1-202ENST00000352886 AGRNO00468 2067 aa16.27■□□□□ 0.19
SHMT1-202ENST00000352886 K7EMI3 77 aa16.26■□□□□ 0.19
SHMT1-202ENST00000352886 LGALS1P09382 135 aaKnown RBP16.26■□□□□ 0.19
SHMT1-202ENST00000352886 IGHV4-31P0DP07 118 aa16.26■□□□□ 0.19
SHMT1-202ENST00000352886 KIF25-AS1Q9Y6Z4 181 aa16.26■□□□□ 0.19
SHMT1-202ENST00000352886 IGHV4OR15-8A0A075B7B6 117 aa16.26■□□□□ 0.19
SHMT1-202ENST00000352886 A0A087WW49 117 aa16.26■□□□□ 0.19
SHMT1-202ENST00000352886 ZNF702PQ9H963 129 aa16.26■□□□□ 0.19
SHMT1-202ENST00000352886 K7EQG2 157 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 FSHBP01225 129 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 LINC00315P59091 139 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 POM121L12Q8N7R1 296 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 DUX5Q96PT3 197 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 JPT2Q9H910 190 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 TRAV12-2A0A075B6T6 113 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 A0A0J9YX75 114 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 PPP1R17O96001 155 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 KRTAP10-9P60411 292 aa16.25■□□□□ 0.19
SHMT1-202ENST00000352886 BEX4Q9NWD9 120 aaPredicted RBP16.25■□□□□ 0.19
SHMT1-202ENST00000352886 K7ERU9 68 aa16.24■□□□□ 0.19
SHMT1-202ENST00000352886 ELANEP08246 267 aa16.24■□□□□ 0.19
SHMT1-202ENST00000352886 PLNP26678 52 aa16.24■□□□□ 0.19
SHMT1-202ENST00000352886 TRAV12-1A0A0B4J245 112 aa16.24■□□□□ 0.19
SHMT1-202ENST00000352886 HOXA3O43365 443 aaPredicted RBP16.24■□□□□ 0.19
SHMT1-202ENST00000352886 C2orf66Q6UXQ4 117 aa16.24■□□□□ 0.19
SHMT1-202ENST00000352886 ODF3Q96PU9 254 aa16.24■□□□□ 0.19
SHMT1-202ENST00000352886 MXRA5Q9NR99 2828 aa16.24■□□□□ 0.19
SHMT1-202ENST00000352886 GAGE12BA1L429 117 aa16.23■□□□□ 0.19
SHMT1-202ENST00000352886 H3BRM9 83 aa16.23■□□□□ 0.19
SHMT1-202ENST00000352886 HOXD3P31249 432 aaPredicted RBP16.23■□□□□ 0.19
SHMT1-202ENST00000352886 HIGD1BQ9P298 99 aa16.23■□□□□ 0.19
SHMT1-202ENST00000352886 F8VRH5 84 aa16.23■□□□□ 0.19
SHMT1-202ENST00000352886 H7C1H1 209 aa16.23■□□□□ 0.19
SHMT1-202ENST00000352886 NEGR1Q7Z3B1 354 aa16.23■□□□□ 0.19
SHMT1-202ENST00000352886 CHTOPQ9Y3Y2 248 aaKnown RBP16.23■□□□□ 0.19
SHMT1-202ENST00000352886 PTPN13Q12923 2485 aa16.22■□□□□ 0.19
SHMT1-202ENST00000352886 TRBV25-1A0A075B6N4 114 aa16.22■□□□□ 0.19
SHMT1-202ENST00000352886 A0A087WWL8 130 aa16.22■□□□□ 0.19
SHMT1-202ENST00000352886 LGALS9O00182 355 aa16.22■□□□□ 0.19
SHMT1-202ENST00000352886 UBE2E2Q96LR5 201 aa16.22■□□□□ 0.19
SHMT1-202ENST00000352886 CHAC1Q9BUX1 264 aa16.22■□□□□ 0.19
SHMT1-202ENST00000352886 SORL1Q92673 2214 aa16.22■□□□□ 0.19
SHMT1-202ENST00000352886 UBR5O95071 2799 aaPredicted RBP16.21■□□□□ 0.19
SHMT1-202ENST00000352886 NEXN-AS1Q8NBZ9 246 aa16.21■□□□□ 0.19
SHMT1-202ENST00000352886 HLA-DRB4P13762 266 aa16.2■□□□□ 0.18
SHMT1-202ENST00000352886 SUMO4Q6EEV6 95 aa16.2■□□□□ 0.18
SHMT1-202ENST00000352886 ZNF843Q8N446 348 aa16.2■□□□□ 0.18
SHMT1-202ENST00000352886 HLA-DRB4X5D2U9 266 aa16.2■□□□□ 0.18
SHMT1-202ENST00000352886 C9orf118A6NHY6 69 aa16.2■□□□□ 0.18
SHMT1-202ENST00000352886 SPINK13Q1W4C9 94 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms