RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 IGHV4-61A0A0C4DH41 118 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 ATP5LO75964 103 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 FSTL3O95633 263 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 ASIPP42127 132 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 Q6AWC8 147 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 SCRT2Q9NQ03 307 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 C10orf99Q6UWK7 81 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 MSRB2Q9Y3D2 182 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 TRAV2A0A0B4J234 112 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 CRYGBP07316 175 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 EDN2P20800 178 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 Q6ZS46 218 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 ATP6V0BQ99437 205 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 LGALS3P17931 250 aaKnown RBP9.22□□□□□ -0.93
USP1-201ENST00000339950 DGAT2L7PQ6IED9 249 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 NPFFR1Q9GZQ6 430 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 SMAD5-AS1Q9Y6J3 95 aa9.22□□□□□ -0.93
USP1-201ENST00000339950 HECTD1Q9ULT8 2610 aa9.21□□□□□ -0.93
USP1-201ENST00000339950 IGKV2D-26A0A0A0MRZ7 120 aa9.21□□□□□ -0.93
USP1-201ENST00000339950 LINC01549A6NIU2 74 aa9.21□□□□□ -0.93
USP1-201ENST00000339950 CHD6Q8TD26 2715 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 FLNBO75369 2602 aaKnown RBP9.21□□□□□ -0.94
USP1-201ENST00000339950 TRBV20-1A0A075B6N2 111 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 NPIPB6E9PJ23 425 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 M0R1W7 72 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 SS18L2Q9UHA2 77 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 TRAV26-1A0A087WT03 109 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 BUB3O43684 328 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 PRM2P04554 102 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 SPINK13Q1W4C9 94 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 DEFB136Q30KP8 78 aa9.21□□□□□ -0.94
USP1-201ENST00000339950 SYNJ2BPP57105 145 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 KLHL30-AS1Q8NEE0 82 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 LINC01545Q5VT33 79 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 OR11H6Q8NGC7 330 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 C11orf21Q9P2W6 132 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 ADARB2-AS1A8MUL3 147 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 B5MCH6 92 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 INS-IGF2F8WCM5 200 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 LYPD1Q8N2G4 141 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 CLUHP3Q96NS8 147 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 PIMREGQ9BSJ6 248 aa9.2□□□□□ -0.94
USP1-201ENST00000339950 CENPVL3A0A0U1RRI6 287 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 A0A1B0GW15 77 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 CRXO43186 299 aaPredicted RBP9.19□□□□□ -0.94
USP1-201ENST00000339950 LAGE3Q14657 143 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 C3orf56Q8N813 242 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 RNF5Q99942 180 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 GAGE2BQ13066 116 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 GAGE2EQ4V326 116 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 NXT2Q9NPJ8 142 aaKnown RBP9.19□□□□□ -0.94
USP1-201ENST00000339950 GAGE2DQ9UEU5 116 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 CHTOPQ9Y3Y2 248 aaKnown RBP9.19□□□□□ -0.94
USP1-201ENST00000339950 A8MWV9 139 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 UCNP55089 124 aa9.19□□□□□ -0.94
USP1-201ENST00000339950 CFAP46Q8IYW2 2715 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 PPBPP02775 128 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 UBE2E1P51965 193 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 PDE6HQ13956 83 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 PTH2Q96A98 100 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 CCDC140Q96MF4 163 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 SLC50A1Q9BRV3 221 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 WI2-2373I1.2A0A1W2PRP0 233 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 TNFRSF13BO14836 293 aaPredicted RBP9.18□□□□□ -0.94
USP1-201ENST00000339950 TSPAN13O95857 204 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 MOB4Q9Y3A3 225 aa9.18□□□□□ -0.94
USP1-201ENST00000339950 TRBV25-1A0A075B6N4 114 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 SRSF1Q07955 248 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP1-201ENST00000339950 FAM110DQ8TAY7 271 aaPredicted RBP9.17□□□□□ -0.94
USP1-201ENST00000339950 IGHV4-30-2A0A087WSY4 118 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 IGHV3-16A0A0C4DH30 117 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 C9JAW5 83 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 ZFAND6Q6FIF0 208 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 NBL1P41271 181 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 MINOS1Q5TGZ0 78 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 MINOS1-NBL1R4GNA1 71 aa9.17□□□□□ -0.94
USP1-201ENST00000339950 PRSS47A8MTI9 375 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 G3V4G9 280 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 HLA-DRB4P13762 266 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 ITLN2Q8WWU7 325 aaPredicted RBP9.16□□□□□ -0.94
USP1-201ENST00000339950 DLX4Q92988 240 aaPredicted RBP9.16□□□□□ -0.94
USP1-201ENST00000339950 OPRPNQ99935 248 aaPredicted RBP9.16□□□□□ -0.94
USP1-201ENST00000339950 HLA-DRB4X5D2U9 266 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 TRAV21A0A0B4J279 112 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 LY6LH3BQJ8 138 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 IGHV4-59P01825 116 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 RPL39P62891 51 aaKnown RBP9.16□□□□□ -0.94
USP1-201ENST00000339950 C8orf31Q8N9H6 132 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 KIR2DL4Q99706 377 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 SLC25A16P16260 332 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 IGF2-ASQ6U949 168 aa9.16□□□□□ -0.94
USP1-201ENST00000339950 COX6CP09669 75 aa9.15□□□□□ -0.94
USP1-201ENST00000339950 C2orf66Q6UXQ4 117 aa9.15□□□□□ -0.94
USP1-201ENST00000339950 PHLDA1Q8WV24 401 aaPredicted RBP9.15□□□□□ -0.94
USP1-201ENST00000339950 C20orf78Q9BR46 151 aa9.15□□□□□ -0.94
USP1-201ENST00000339950 IGHV3-53P01767 116 aa9.15□□□□□ -0.94
USP1-201ENST00000339950 PRR9Q5T870 116 aa9.15□□□□□ -0.94
USP1-201ENST00000339950 IGHV3-38A0A0C4DH36 116 aa9.15□□□□□ -0.95
USP1-201ENST00000339950 F8W735 103 aaPredicted RBP9.15□□□□□ -0.95
USP1-201ENST00000339950 CRYBA4P53673 196 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms