RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 SCGB2A2Q13296 93 aa12.11□□□□□ -0.47
USH1C-202ENST00000318024 C15orf32Q32M92 178 aa12.11□□□□□ -0.47
USH1C-202ENST00000318024 NHP2Q9NX24 153 aaKnown RBP12.11□□□□□ -0.47
USH1C-202ENST00000318024 C21orf62Q9NYP8 219 aa12.11□□□□□ -0.47
USH1C-202ENST00000318024 RPL24P83731 157 aaKnown RBP12.11□□□□□ -0.47
USH1C-202ENST00000318024 TAL2Q16559 108 aa12.11□□□□□ -0.47
USH1C-202ENST00000318024 SAMD13Q5VXD3 122 aa12.11□□□□□ -0.47
USH1C-202ENST00000318024 IGHV3-35A0A0C4DH35 117 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 ORM1P02763 201 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 CTSGP08311 255 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 NRACQ8N912 160 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 MYO9AB2RTY4 2548 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 IGKV3D-20A0A0C4DH25 116 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 PRAC2D3DTV9 90 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 F8W1H4 67 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 HOXA3O43365 443 aaPredicted RBP12.1□□□□□ -0.47
USH1C-202ENST00000318024 WFDC2Q14508 124 aa12.1□□□□□ -0.47
USH1C-202ENST00000318024 MRPL35Q9NZE8 188 aaKnown RBP12.1□□□□□ -0.47
USH1C-202ENST00000318024 IGHG2P01859 326 aa12.09□□□□□ -0.47
USH1C-202ENST00000318024 Q6YL49 198 aa12.09□□□□□ -0.47
USH1C-202ENST00000318024 C11orf21Q9P2W6 132 aa12.09□□□□□ -0.47
USH1C-202ENST00000318024 K7EMI3 77 aa12.09□□□□□ -0.47
USH1C-202ENST00000318024 AZU1P20160 251 aa12.09□□□□□ -0.47
USH1C-202ENST00000318024 ERCC8Q13216 396 aa12.09□□□□□ -0.47
USH1C-202ENST00000318024 PRO0461Q9UI25 63 aa12.09□□□□□ -0.47
USH1C-202ENST00000318024 IGHV3OR16-8A0A075B7F1 116 aa12.08□□□□□ -0.48
USH1C-202ENST00000318024 A0A1B0GWB2 263 aa12.08□□□□□ -0.48
USH1C-202ENST00000318024 C12orf74Q32Q52 190 aa12.08□□□□□ -0.48
USH1C-202ENST00000318024 CD300EQ496F6 205 aaPredicted RBP12.08□□□□□ -0.48
USH1C-202ENST00000318024 LCNL1Q6ZST4 164 aa12.08□□□□□ -0.48
USH1C-202ENST00000318024 C9orf139Q6ZV77 190 aa12.08□□□□□ -0.48
USH1C-202ENST00000318024 TRBV7-3A0A075B6L6 115 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 TRGV3P03979 118 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 IGF1P05019 195 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 CLEC3BP05452 202 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 PPIFP30405 207 aaKnown RBP12.07□□□□□ -0.48
USH1C-202ENST00000318024 SIGMAR1Q99720 223 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 SPATA25Q9BR10 227 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 ANK3Q12955 4377 aaKnown RBP12.07□□□□□ -0.48
USH1C-202ENST00000318024 A0A087WX48 190 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 IGHV7-4-1A0A0J9YVY3 117 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 RBAKDNA6NC62 111 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 LINC01619G3V211 115 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 KRTAP1-1Q07627 177 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 C19orf54Q5BKX5 351 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 TMEM160Q9NX00 188 aa12.07□□□□□ -0.48
USH1C-202ENST00000318024 CLEC19AQ6UXS0 136 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 ZNF479Q96JC4 524 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 SMR3AQ99954 134 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 GTSF1LQ9H1H1 148 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 YAE1D1Q9NRH1 226 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 VPREB3Q9UKI3 123 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 TSSC4Q9Y5U2 329 aaPredicted RBP12.06□□□□□ -0.48
USH1C-202ENST00000318024 OTOGQ6ZRI0 2925 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 GAGE12HA6NDE8 117 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 KLK15Q9H2R5 256 aa12.06□□□□□ -0.48
USH1C-202ENST00000318024 A0A1B0GV72 72 aa12.05□□□□□ -0.48
USH1C-202ENST00000318024 ZNF502Q8TBZ5 544 aa12.05□□□□□ -0.48
USH1C-202ENST00000318024 SPAG8Q99932 426 aaPredicted RBP12.05□□□□□ -0.48
USH1C-202ENST00000318024 IGHV4-4A0A075B6R2 117 aa12.05□□□□□ -0.48
USH1C-202ENST00000318024 J3KRW8 73 aa12.05□□□□□ -0.48
USH1C-202ENST00000318024 LAGE3Q14657 143 aa12.05□□□□□ -0.48
USH1C-202ENST00000318024 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.05□□□□□ -0.48
USH1C-202ENST00000318024 CCDC140Q96MF4 163 aa12.05□□□□□ -0.48
USH1C-202ENST00000318024 H3BMG7 143 aa12.04□□□□□ -0.48
USH1C-202ENST00000318024 CRIP2P52943 208 aaPredicted RBP12.04□□□□□ -0.48
USH1C-202ENST00000318024 C10orf99Q6UWK7 81 aa12.04□□□□□ -0.48
USH1C-202ENST00000318024 ZFAND3Q9H8U3 227 aa12.04□□□□□ -0.48
USH1C-202ENST00000318024 BUB3O43684 328 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 PF4V1P10720 104 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 ATP5G2Q06055 141 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 RRN3P1Q2M238 152 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 KLK9Q2XQG4 91 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 SH2D6Q7Z4S9 175 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 KLK9Q9UKQ9 250 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 TRAV12-1A0A0B4J245 112 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 ZNF207O43670 478 aaKnown RBP12.03□□□□□ -0.48
USH1C-202ENST00000318024 IGHV3-11P01762 117 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 MYOZ3Q8TDC0 251 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 AGPAT4-IT1Q9H0P7 198 aa12.03□□□□□ -0.48
USH1C-202ENST00000318024 SMAGPQ0VAQ4 97 aa12.02□□□□□ -0.48
USH1C-202ENST00000318024 RNF182Q8N6D2 247 aa12.02□□□□□ -0.48
USH1C-202ENST00000318024 EEF1AKMT3Q96AZ1 226 aa12.02□□□□□ -0.48
USH1C-202ENST00000318024 MTORP42345 2549 aa12.02□□□□□ -0.49
USH1C-202ENST00000318024 CLPSL1A2RUU4 121 aa12.02□□□□□ -0.49
USH1C-202ENST00000318024 ETDBQ3ZM63 59 aa12.02□□□□□ -0.49
USH1C-202ENST00000318024 NF1P21359 2839 aa12.02□□□□□ -0.49
USH1C-202ENST00000318024 TRAV8-2A0A0B4J237 113 aa12.01□□□□□ -0.49
USH1C-202ENST00000318024 TRAV26-2A0A0B4J265 109 aa12.01□□□□□ -0.49
USH1C-202ENST00000318024 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.01□□□□□ -0.49
USH1C-202ENST00000318024 PLNP26678 52 aa12.01□□□□□ -0.49
USH1C-202ENST00000318024 MORN3Q6PF18 240 aaPredicted RBP12.01□□□□□ -0.49
USH1C-202ENST00000318024 AMTNQ6UX39 209 aa12.01□□□□□ -0.49
USH1C-202ENST00000318024 F8VRH5 84 aa12.01□□□□□ -0.49
USH1C-202ENST00000318024 TRBV12-3P01733 135 aa12.01□□□□□ -0.49
USH1C-202ENST00000318024 SLC50A1Q9BRV3 221 aa12□□□□□ -0.49
USH1C-202ENST00000318024 TRBV7-1A0A0A6YYK4 115 aa11.99□□□□□ -0.49
USH1C-202ENST00000318024 FAM223BA6NKX1 122 aa11.99□□□□□ -0.49
USH1C-202ENST00000318024 J3QR89 54 aa11.99□□□□□ -0.49
USH1C-202ENST00000318024 Q6ZQT7 251 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms