RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 S100A4P26447 101 aaKnown RBP13.21□□□□□ -0.29
LIME1-201ENST00000309546 Q86TA4 180 aa13.21□□□□□ -0.29
LIME1-201ENST00000309546 C10orf126Q8N4M7 172 aa13.21□□□□□ -0.29
LIME1-201ENST00000309546 TRBV6-4A0A1B0GX49 114 aa13.2□□□□□ -0.3
LIME1-201ENST00000309546 MAP1LC3B2A6NCE7 125 aa13.2□□□□□ -0.3
LIME1-201ENST00000309546 G3V3Q6 166 aa13.2□□□□□ -0.3
LIME1-201ENST00000309546 CIDEAO60543 219 aa13.2□□□□□ -0.3
LIME1-201ENST00000309546 MAP1LC3BQ9GZQ8 125 aa13.2□□□□□ -0.3
LIME1-201ENST00000309546 A0A087WTM6 91 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 IGKV3D-20A0A0C4DH25 116 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 IGHV3-38A0A0C4DH36 116 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 FAM74A7A6NL05 159 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 TIRAPP58753 221 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 OR10J3Q5JRS4 329 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 SCRT2Q9NQ03 307 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 PGPEP1Q9NXJ5 209 aa13.19□□□□□ -0.3
LIME1-201ENST00000309546 TRAV8-6A0A0B4J262 113 aa13.18□□□□□ -0.3
LIME1-201ENST00000309546 FABP5P3A8MUU1 101 aa13.18□□□□□ -0.3
LIME1-201ENST00000309546 SMLR1H3BR10 107 aa13.18□□□□□ -0.3
LIME1-201ENST00000309546 MGST1P10620 155 aaKnown RBP13.18□□□□□ -0.3
LIME1-201ENST00000309546 ASIPP42127 132 aa13.18□□□□□ -0.3
LIME1-201ENST00000309546 LGALSLQ3ZCW2 172 aaPredicted RBP13.18□□□□□ -0.3
LIME1-201ENST00000309546 Q8N1X5 172 aa13.18□□□□□ -0.3
LIME1-201ENST00000309546 PTH2Q96A98 100 aa13.18□□□□□ -0.3
LIME1-201ENST00000309546 CDPF1Q6NVV7 123 aa13.17□□□□□ -0.3
LIME1-201ENST00000309546 HIST1H2BAQ96A08 127 aa13.17□□□□□ -0.3
LIME1-201ENST00000309546 NKX6-2Q9C056 277 aaPredicted RBP13.17□□□□□ -0.3
LIME1-201ENST00000309546 PARLQ9H300 379 aa13.17□□□□□ -0.3
LIME1-201ENST00000309546 CYTL1Q9NRR1 136 aa13.17□□□□□ -0.3
LIME1-201ENST00000309546 B4DEV8 164 aa13.16□□□□□ -0.3
LIME1-201ENST00000309546 H3BVH4 76 aa13.16□□□□□ -0.3
LIME1-201ENST00000309546 PSCAO43653 123 aa13.16□□□□□ -0.3
LIME1-201ENST00000309546 UBE2G1P62253 170 aa13.16□□□□□ -0.3
LIME1-201ENST00000309546 LINC01556Q5JQF7 62 aa13.16□□□□□ -0.3
LIME1-201ENST00000309546 ZC2HC1AQ96GY0 325 aa13.16□□□□□ -0.3
LIME1-201ENST00000309546 A8MWV9 139 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 M0R036 132 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 IGHV3-30P01768 117 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 IGHV3-33P01772 117 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 IGHV3-30-3P0DP02 117 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 IGHV3-30-5P0DP03 117 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 LELP1Q5T871 98 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 ATP6V0E2Q8NHE4 81 aa13.15□□□□□ -0.3
LIME1-201ENST00000309546 CST9LP1Q5W188 147 aa13.14□□□□□ -0.31
LIME1-201ENST00000309546 Q6ZSN1 163 aa13.14□□□□□ -0.31
LIME1-201ENST00000309546 STOML3Q8TAV4 291 aa13.14□□□□□ -0.31
LIME1-201ENST00000309546 GTSF1LQ9H1H1 148 aa13.14□□□□□ -0.31
LIME1-201ENST00000309546 Q9HAA7 133 aa13.14□□□□□ -0.31
LIME1-201ENST00000309546 GRIFINA4D1Z8 144 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 GAGE12JA6NER3 117 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 SH2D1AO60880 128 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 FHITP49789 147 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 GAGE1Q13065 139 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 GAGE4Q13068 117 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 GAGE5Q13069 117 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 GAGE13Q4V321 117 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 FMC1Q96HJ9 113 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 JPT2Q9H910 190 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 IL36BQ9NZH7 164 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 ZFP30Q9Y2G7 519 aa13.13□□□□□ -0.31
LIME1-201ENST00000309546 AKR1C3P42330 323 aa13.12□□□□□ -0.31
LIME1-201ENST00000309546 CRIP1P50238 77 aa13.12□□□□□ -0.31
LIME1-201ENST00000309546 ZFP2Q6ZN57 461 aa13.12□□□□□ -0.31
LIME1-201ENST00000309546 SYT8Q8NBV8 401 aa13.12□□□□□ -0.31
LIME1-201ENST00000309546 TMSB15BA0A087X1C1 80 aa13.11□□□□□ -0.31
LIME1-201ENST00000309546 A0A1B0GV50 99 aa13.11□□□□□ -0.31
LIME1-201ENST00000309546 KRBOX1C9JBD0 128 aa13.11□□□□□ -0.31
LIME1-201ENST00000309546 ARMS2P0C7Q2 107 aa13.11□□□□□ -0.31
LIME1-201ENST00000309546 FAM162BQ5T6X4 162 aa13.11□□□□□ -0.31
LIME1-201ENST00000309546 SAMD10Q9BYL1 202 aa13.11□□□□□ -0.31
LIME1-201ENST00000309546 BOLA1Q9Y3E2 137 aa13.11□□□□□ -0.31
LIME1-201ENST00000309546 IBA57-AS1B1ANH7 110 aa13.1□□□□□ -0.31
LIME1-201ENST00000309546 KRTAP10-1P60331 282 aa13.1□□□□□ -0.31
LIME1-201ENST00000309546 PIK3CD-AS1Q5SR53 167 aa13.1□□□□□ -0.31
LIME1-201ENST00000309546 FAM74A4Q5TZK3 123 aa13.1□□□□□ -0.31
LIME1-201ENST00000309546 DMRTA1Q5VZB9 504 aa13.1□□□□□ -0.31
LIME1-201ENST00000309546 OR11H4Q8NGC9 324 aa13.1□□□□□ -0.31
LIME1-201ENST00000309546 PAGE4O60829 102 aa13.09□□□□□ -0.31
LIME1-201ENST00000309546 ZNF345Q14585 488 aa13.09□□□□□ -0.31
LIME1-201ENST00000309546 KCNRGQ8N5I3 272 aa13.09□□□□□ -0.31
LIME1-201ENST00000309546 C14orf178Q8N769 122 aaPredicted RBP13.09□□□□□ -0.31
LIME1-201ENST00000309546 FAM213BQ8TBF2 198 aa13.09□□□□□ -0.31
LIME1-201ENST00000309546 TCEAL7Q9BRU2 100 aa13.09□□□□□ -0.31
LIME1-201ENST00000309546 PHLDA3Q9Y5J5 127 aa13.09□□□□□ -0.31
LIME1-201ENST00000309546 RHODO00212 210 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 LTAP01374 205 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 LINC00694P0DN24 101 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 TPT1P13693 172 aaKnown RBP13.08□□□□□ -0.32
LIME1-201ENST00000309546 DNLZQ5SXM8 178 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 UFSP1Q6NVU6 142 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 COX8CQ7Z4L0 72 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 Q8N3U1 123 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 SFT2D1Q8WV19 159 aa13.08□□□□□ -0.32
LIME1-201ENST00000309546 ZNF471Q9BX82 626 aaPredicted RBP13.08□□□□□ -0.32
LIME1-201ENST00000309546 TRBV6-1A0A0K0K1D8 114 aa13.07□□□□□ -0.32
LIME1-201ENST00000309546 M0R381 172 aa13.07□□□□□ -0.32
LIME1-201ENST00000309546 ZNF674Q2M3X9 581 aa13.07□□□□□ -0.32
LIME1-201ENST00000309546 Q9UF83 564 aa13.07□□□□□ -0.32
LIME1-201ENST00000309546 A0A087WWL8 130 aa13.06□□□□□ -0.32
LIME1-201ENST00000309546 IGLV5-52A0A0A0MRZ9 124 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms