RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CHAC1Q9BUX1 264 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 HSPB11Q9Y547 144 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 FGF8P55075 233 aaPredicted RBP9.73□□□□□ -0.85
CCDC88B-201ENST00000301897 ZFP69Q49AA0 526 aa9.73□□□□□ -0.85
CCDC88B-201ENST00000301897 PPP1R1CQ8WVI7 109 aa9.73□□□□□ -0.85
CCDC88B-201ENST00000301897 URGCP-MRPS24S4R325 110 aa9.73□□□□□ -0.85
CCDC88B-201ENST00000301897 A8MWV9 139 aa9.72□□□□□ -0.85
CCDC88B-201ENST00000301897 EIF3GO75821 320 aaKnown RBP eCLIP9.72□□□□□ -0.85
CCDC88B-201ENST00000301897 DAZ4Q86SG3 579 aaKnown RBP9.72□□□□□ -0.85
CCDC88B-201ENST00000301897 DAZ3Q9NR90 486 aaKnown RBP9.72□□□□□ -0.85
CCDC88B-201ENST00000301897 PGPEP1LA6NFU8 196 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 MPC2O95563 127 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 GCGP01275 180 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 LINC00694P0DN24 101 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 H2BFSP57053 126 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 DEFA1P59665 94 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 DEFA3P59666 94 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 GNG5P63218 68 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 SMUG1Q53HV7 270 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 CYB561D1Q8N8Q1 229 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 C5orf17Q8NAS9 161 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 BAALCQ8WXS3 180 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 C11orf21Q9P2W6 132 aa9.71□□□□□ -0.86
CCDC88B-201ENST00000301897 LRP1Q07954 4544 aaKnown RBP9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 RNF222A6NCQ9 220 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 GAGE12JA6NER3 117 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 IGLV2-8P01709 118 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 RPL12P30050 165 aaKnown RBP9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 GAGE1Q13065 139 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 GAGE4Q13068 117 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 GAGE5Q13069 117 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 GAGE13Q4V321 117 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 Q8N3U1 123 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 OR10G9Q8NGN4 311 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 SMIM3Q9BZL3 60 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 PARLQ9H300 379 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 PLA2G2DQ9UNK4 145 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 HMCN2Q8NDA2 5059 aa9.7□□□□□ -0.86
CCDC88B-201ENST00000301897 TCRAP04437 139 aa9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 RNASE3P12724 160 aaKnown RBP9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 S100A4P26447 101 aaKnown RBP9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 ZNF80P51504 273 aaPredicted RBP9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 ELOBQ15370 118 aa9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 C14orf177Q52M58 125 aa9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 CHCHD7Q9BUK0 85 aa9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 WFDC1Q9HC57 220 aa9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 PSG8Q9UQ74 426 aa9.69□□□□□ -0.86
CCDC88B-201ENST00000301897 IGKV2D-24A0A075B6R9 120 aa9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 KRTAP10-4P60372 401 aaPredicted RBP9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 LGALSLQ3ZCW2 172 aaPredicted RBP9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 LINC01620Q4KN68 170 aa9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 SAPCD1Q5SSQ6 148 aa9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 KCNIP4Q6PIL6 250 aa9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 OR10G7Q8NGN6 311 aa9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 CIRBP-AS1Q8TBR5 109 aa9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 SGK494Q96LW2 274 aa9.68□□□□□ -0.86
CCDC88B-201ENST00000301897 RHODO00212 210 aa9.67□□□□□ -0.86
CCDC88B-201ENST00000301897 ARL14EPLP0DKL9 152 aa9.67□□□□□ -0.86
CCDC88B-201ENST00000301897 RAB2AP61019 212 aa9.67□□□□□ -0.86
CCDC88B-201ENST00000301897 FLI1Q01543 452 aaPredicted RBP9.67□□□□□ -0.86
CCDC88B-201ENST00000301897 NIT1Q86X76 327 aa9.67□□□□□ -0.86
CCDC88B-201ENST00000301897 TMEM75Q8N9X5 138 aa9.67□□□□□ -0.86
CCDC88B-201ENST00000301897 LINC00479Q96M42 142 aa9.67□□□□□ -0.86
CCDC88B-201ENST00000301897 A0A087WX48 190 aa9.66□□□□□ -0.86
CCDC88B-201ENST00000301897 HMGB3O15347 200 aaKnown RBP9.66□□□□□ -0.86
CCDC88B-201ENST00000301897 ASIPP42127 132 aa9.66□□□□□ -0.86
CCDC88B-201ENST00000301897 CDC34P49427 236 aaPredicted RBP9.66□□□□□ -0.86
CCDC88B-201ENST00000301897 Q0VG73 95 aa9.66□□□□□ -0.86
CCDC88B-201ENST00000301897 OR2T35Q8NGX2 323 aa9.66□□□□□ -0.86
CCDC88B-201ENST00000301897 SUN5Q8TC36 379 aa9.66□□□□□ -0.86
CCDC88B-201ENST00000301897 IGLV2-11P01706 119 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 STAG3L2P0CL84 134 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 STAG3L3P0CL85 134 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 UFSP1Q6NVU6 142 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 PRNTQ86SH4 94 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 TMEM167BQ9NRX6 74 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 IL36BQ9NZH7 164 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 KLK12Q9UKR0 248 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 EPDR1Q9UM22 224 aa9.65□□□□□ -0.86
CCDC88B-201ENST00000301897 UBR4Q5T4S7 5183 aa9.65□□□□□ -0.87
CCDC88B-201ENST00000301897 GCHFRP30047 84 aa9.64□□□□□ -0.87
CCDC88B-201ENST00000301897 SUMO1P63165 101 aaKnown RBP9.64□□□□□ -0.87
CCDC88B-201ENST00000301897 ATRAIDQ6UW56 229 aa9.64□□□□□ -0.87
CCDC88B-201ENST00000301897 UBE2WQ96B02 151 aa9.64□□□□□ -0.87
CCDC88B-201ENST00000301897 FAT3Q8TDW7 4589 aa9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 FABP5P3A8MUU1 101 aa9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 SSNA1O43805 119 aa9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 MBP02144 154 aa9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 RPL37AP61513 92 aaKnown RBP9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 DMRTA1Q5VZB9 504 aa9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 C14orf178Q8N769 122 aaPredicted RBP9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 OR2G3Q8NGZ4 309 aa9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 SAMD10Q9BYL1 202 aa9.63□□□□□ -0.87
CCDC88B-201ENST00000301897 IGKV3D-20A0A0C4DH25 116 aa9.62□□□□□ -0.87
CCDC88B-201ENST00000301897 PTTG1O95997 202 aa9.62□□□□□ -0.87
CCDC88B-201ENST00000301897 RAB24Q969Q5 203 aa9.62□□□□□ -0.87
CCDC88B-201ENST00000301897 C1orf43Q9BWL3 253 aa9.62□□□□□ -0.87
CCDC88B-201ENST00000301897 Q9UF83 564 aa9.62□□□□□ -0.87
CCDC88B-201ENST00000301897 ALG5Q9Y673 324 aa9.62□□□□□ -0.87
CCDC88B-201ENST00000301897 TRBV10-1A0A0K0K1A3 114 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms