RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 J3QQQ9 107 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 MT-ATP8P03928 68 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 Q0VFX4 171 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 C17orf58Q2M2W7 97 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 PCP2Q8IVA1 136 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 C20orf78Q9BR46 151 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 UPK3BQ9BT76 320 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 NSUN5P1Q3KNT7 163 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 TMEM61Q8N0U2 210 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 GAFA1Q96PS6 74 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 TMEM133Q9H2Q1 129 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 ATP5J2P56134 94 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 TPRP12270 2363 aaKnown RBP5.06□□□□□ -1.6
VPS35-201ENST00000299138 H3BRN7 92 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 UQCRQO14949 82 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 DEFB130BP0DP73 79 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 DEFB130AP0DP74 79 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 EFNA4P52798 201 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 ESPL1Q14674 2120 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 PTPRSQ13332 1948 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 CD59P13987 128 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 NANOS2P60321 138 aaKnown RBP5.06□□□□□ -1.6
VPS35-201ENST00000299138 SDIM1Q6ZPB5 146 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 ZNF503Q96F45 646 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 CNFNQ9BYD5 112 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 PAX8Q06710 450 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 ASPHD1Q5U4P2 390 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 ICOSQ9Y6W8 199 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 IGHV1-18A0A0C4DH31 117 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 C17orf100A8MU93 164 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 DYNAPQ8N1N2 210 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 C8orf49Q96NF6 230 aa5.06□□□□□ -1.6
VPS35-201ENST00000299138 DPM3Q9P2X0 92 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 SNURFQ9Y675 71 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 PINLYPA6NC86 204 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 LRCOL1A6NCL2 159 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 USP17L23D6RBM5 183 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 IGFL3Q6UXB1 125 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 Q6ZR03 302 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 MSRB2Q9Y3D2 182 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 I3L3M4 83 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 J3QL48 77 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 RHOHQ15669 191 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 TDRG1Q3Y452 100 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 LINC00694P0DN24 101 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 COL8A2P25067 703 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 C2orf16Q68DN1 1984 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 MRPL51Q4U2R6 128 aaKnown RBP5.05□□□□□ -1.6
VPS35-201ENST00000299138 HIGD2BQ4VC39 106 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 CLEC2BQ92478 149 aa5.05□□□□□ -1.6
VPS35-201ENST00000299138 MINOS1Q5TGZ0 78 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 FAM216BQ8N7L0 139 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 MINOS1-NBL1R4GNA1 71 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 TRBV25-1A0A075B6N4 114 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 LINC01546A6NGU7 62 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 IGLC6P0CF74 106 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 UBE2AP49459 152 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 COX7A2LO14548 114 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 C9orf139Q6ZV77 190 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 A0A096LPF7 62 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 IGHV4-61A0A0C4DH41 118 aa5.04□□□□□ -1.6
VPS35-201ENST00000299138 E9PLD3 99 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 NDUFS7O75251 213 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 WT1-ASQ06250 92 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 LINC01620Q4KN68 170 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 PATE2Q6UY27 113 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 GTSF1Q8WW33 167 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 CCL19Q99731 98 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 IGKV2D-26A0A0A0MRZ7 120 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 ATP5G1P05496 136 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 IGHV4-38-2P0DP08 117 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 CCL3L1P16619 93 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 SCXQ7RTU7 201 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 ZNF503-AS2A6NEH8 195 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 F8VRH5 84 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 IGHV1-46P01743 117 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 IGHV1-3A0A0C4DH29 117 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 Q9H8V8 135 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 SMIM9A6NGZ8 99 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 COX6B1P14854 86 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 TP73-AS1Q9UF72 201 aa5.03□□□□□ -1.6
VPS35-201ENST00000299138 CCDC179H3BU77 68 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 ZNF134P52741 427 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 C9orf47Q6ZRZ4 202 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 ETDCA0A1B0GVM5 59 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 DEFB121Q5J5C9 76 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 FAM120AOSQ5T036 256 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 C10orf55Q5SWW7 151 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 SOSTDC1Q6X4U4 206 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 PRR25Q96S07 402 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 KLK9Q9UKQ9 250 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 CACNA1EQ15878 2313 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 SZT2Q5T011 3432 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 IGKV1OR2-108A0A075B7D4 117 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 WI2-2373I1.2A0A1W2PRP0 233 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 TNRC18O15417 2968 aaPredicted RBP5.02□□□□□ -1.61
VPS35-201ENST00000299138 RPL18AQ02543 176 aaKnown RBP5.02□□□□□ -1.61
VPS35-201ENST00000299138 ZNRF2Q8NHG8 242 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 LGALS9O00182 355 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 NCR3O14931 201 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms