RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 TMEM136Q6ZRR5 245 aa11.67□□□□□ -0.54
LSM6-201ENST00000296581 RBPMS2Q6ZRY4 209 aaKnown RBP11.67□□□□□ -0.54
LSM6-201ENST00000296581 CCL24O00175 119 aa11.66□□□□□ -0.54
LSM6-201ENST00000296581 CKS1BP61024 79 aa11.66□□□□□ -0.54
LSM6-201ENST00000296581 SRSF2Q01130 221 aaKnown RBP11.66□□□□□ -0.54
LSM6-201ENST00000296581 ATP5L2Q7Z4Y8 100 aa11.66□□□□□ -0.54
LSM6-201ENST00000296581 SPATA12Q7Z6I5 190 aa11.66□□□□□ -0.54
LSM6-201ENST00000296581 WFDC3Q8IUB2 231 aa11.66□□□□□ -0.54
LSM6-201ENST00000296581 FABP5P3A8MUU1 101 aa11.66□□□□□ -0.54
LSM6-201ENST00000296581 DEFB1P60022 68 aa11.66□□□□□ -0.54
LSM6-201ENST00000296581 A0A1B0GXF2 115 aa11.65□□□□□ -0.54
LSM6-201ENST00000296581 TMEM189A5PLL7 270 aa11.65□□□□□ -0.54
LSM6-201ENST00000296581 K7EP34 96 aa11.65□□□□□ -0.54
LSM6-201ENST00000296581 FAM19A4Q96LR4 140 aa11.65□□□□□ -0.54
LSM6-201ENST00000296581 TRBV7-9A0A0J9YWB2 115 aa11.65□□□□□ -0.55
LSM6-201ENST00000296581 F6UB75 175 aa11.65□□□□□ -0.55
LSM6-201ENST00000296581 HIST1H1AQ02539 215 aaPredicted RBP11.65□□□□□ -0.55
LSM6-201ENST00000296581 FLNBO75369 2602 aaKnown RBP11.65□□□□□ -0.55
LSM6-201ENST00000296581 ADARB2-AS1A8MUL3 147 aa11.64□□□□□ -0.55
LSM6-201ENST00000296581 SNRPD3P62318 126 aaKnown RBP11.64□□□□□ -0.55
LSM6-201ENST00000296581 PGLYRP4Q96LB8 373 aa11.64□□□□□ -0.55
LSM6-201ENST00000296581 SSBP4Q9BWG4 385 aaPredicted RBP11.64□□□□□ -0.55
LSM6-201ENST00000296581 TRAV2A0A0B4J234 112 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 ZNF688P0C7X2 276 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 Q6AWC8 147 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 OR4C46A6NHA9 309 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 M0R2Z0 102 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 HLA-DQA1P01909 254 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 LINC01559Q495D7 138 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 ZFAND2AQ8N6M9 145 aa11.63□□□□□ -0.55
LSM6-201ENST00000296581 SETXQ7Z333 2677 aaKnown RBP11.63□□□□□ -0.55
LSM6-201ENST00000296581 PSMG4Q5JS54 123 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 ZNF575Q86XF7 245 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 APRG1Q8IVJ8 170 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 C18orf32Q8TCD1 76 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 hDV102S1A0JD36 115 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 HSBP1O75506 76 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 HSD52Q0P140 79 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 SLAQ13239 276 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 DEFB114Q30KQ6 69 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 GDF5OSQ5U4N7 250 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 SIGLEC8Q9NYZ4 499 aa11.62□□□□□ -0.55
LSM6-201ENST00000296581 C9orf118A6NHY6 69 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 KRTAP10-3P60369 221 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 HBBP68871 147 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 PRR9Q5T870 116 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 TMEM61Q8N0U2 210 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 DYNLRB2Q8TF09 96 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 AP1S3Q96PC3 154 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 SCRT2Q9NQ03 307 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 TMSB15BA0A087X1C1 80 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 SEC11AP67812 179 aa11.61□□□□□ -0.55
LSM6-201ENST00000296581 SETD2Q9BYW2 2564 aaPredicted RBP11.6□□□□□ -0.55
LSM6-201ENST00000296581 A0A0J9YX75 114 aa11.6□□□□□ -0.55
LSM6-201ENST00000296581 ORM1P02763 201 aa11.6□□□□□ -0.55
LSM6-201ENST00000296581 TMEM70Q9BUB7 260 aa11.6□□□□□ -0.55
LSM6-201ENST00000296581 C11orf21Q9P2W6 132 aa11.6□□□□□ -0.55
LSM6-201ENST00000296581 A0A1B0GUT8 65 aa11.6□□□□□ -0.55
LSM6-201ENST00000296581 IGLC6P0CF74 106 aa11.6□□□□□ -0.55
LSM6-201ENST00000296581 ODF3Q96PU9 254 aa11.6□□□□□ -0.55
LSM6-201ENST00000296581 IGKV3D-20A0A0C4DH25 116 aa11.59□□□□□ -0.55
LSM6-201ENST00000296581 APCSP02743 223 aa11.59□□□□□ -0.55
LSM6-201ENST00000296581 CAMPP49913 170 aa11.59□□□□□ -0.55
LSM6-201ENST00000296581 NDUFA11Q86Y39 141 aa11.59□□□□□ -0.55
LSM6-201ENST00000296581 OR2K2Q8NGT1 345 aa11.59□□□□□ -0.55
LSM6-201ENST00000296581 ZNF479Q96JC4 524 aa11.59□□□□□ -0.55
LSM6-201ENST00000296581 C2CD3Q4AC94 2353 aa11.59□□□□□ -0.55
LSM6-201ENST00000296581 TRAV25A0A0B4J276 109 aa11.58□□□□□ -0.55
LSM6-201ENST00000296581 TEX48A0A1B0GUV7 120 aa11.58□□□□□ -0.55
LSM6-201ENST00000296581 ARMS2P0C7Q2 107 aa11.58□□□□□ -0.55
LSM6-201ENST00000296581 FOXI2Q6ZQN5 318 aa11.58□□□□□ -0.55
LSM6-201ENST00000296581 OR5A1Q8NGJ0 315 aa11.58□□□□□ -0.55
LSM6-201ENST00000296581 F8P00451 2351 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 A0A1B0GW15 77 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 GAGE12HA6NDE8 117 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 H3BRM9 83 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 H3BUT2 72 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 CRXO43186 299 aaPredicted RBP11.58□□□□□ -0.56
LSM6-201ENST00000296581 RIGQ13278 110 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 CD300EQ496F6 205 aaPredicted RBP11.58□□□□□ -0.56
LSM6-201ENST00000296581 LYZL1Q6UWQ5 148 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 GATD1Q8NB37 220 aa11.58□□□□□ -0.56
LSM6-201ENST00000296581 TRAV21A0A0B4J279 112 aa11.57□□□□□ -0.56
LSM6-201ENST00000296581 KLLNB2CW77 178 aa11.57□□□□□ -0.56
LSM6-201ENST00000296581 RPL24P83731 157 aaKnown RBP11.57□□□□□ -0.56
LSM6-201ENST00000296581 SPAG8Q99932 426 aaPredicted RBP11.57□□□□□ -0.56
LSM6-201ENST00000296581 DUSP14O95147 198 aaKnown RBP11.57□□□□□ -0.56
LSM6-201ENST00000296581 NSUN5P1Q3KNT7 163 aa11.57□□□□□ -0.56
LSM6-201ENST00000296581 Q6ZQT7 251 aa11.57□□□□□ -0.56
LSM6-201ENST00000296581 OR10AG1Q8NH19 301 aa11.57□□□□□ -0.56
LSM6-201ENST00000296581 MRAP2Q96G30 205 aa11.57□□□□□ -0.56
LSM6-201ENST00000296581 RNASEKQ6P5S7 137 aaKnown RBP11.56□□□□□ -0.56
LSM6-201ENST00000296581 C2orf91Q6ZV80 131 aa11.56□□□□□ -0.56
LSM6-201ENST00000296581 TPPP3Q9BW30 176 aa11.56□□□□□ -0.56
LSM6-201ENST00000296581 GEMIN7Q9H840 131 aaKnown RBP11.56□□□□□ -0.56
LSM6-201ENST00000296581 WNK1Q9H4A3 2382 aa11.56□□□□□ -0.56
LSM6-201ENST00000296581 J3KRW8 73 aa11.56□□□□□ -0.56
LSM6-201ENST00000296581 NAA38Q9BRA0 125 aaKnown RBP11.56□□□□□ -0.56
LSM6-201ENST00000296581 PGPEP1Q9NXJ5 209 aa11.56□□□□□ -0.56
LSM6-201ENST00000296581 BAHCC1Q9P281 2608 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms