RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 NXPH4O95158 308 aa12.33□□□□□ -0.44
CCDC40-201ENST00000269318 NDUFA7O95182 113 aa12.33□□□□□ -0.44
CCDC40-201ENST00000269318 TNFRSF6BO95407 300 aa12.33□□□□□ -0.44
CCDC40-201ENST00000269318 DEFB131AP59861 70 aa12.33□□□□□ -0.44
CCDC40-201ENST00000269318 SPATA12Q7Z6I5 190 aa12.33□□□□□ -0.44
CCDC40-201ENST00000269318 TMEM70Q9BUB7 260 aa12.33□□□□□ -0.44
CCDC40-201ENST00000269318 PHLDA3Q9Y5J5 127 aa12.33□□□□□ -0.44
CCDC40-201ENST00000269318 TRAV12-2A0A075B6T6 113 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 M0R381 172 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 GATA1P15976 413 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-201ENST00000269318 TSPOP30536 169 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 SPINK13Q1W4C9 94 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 MAST4O15021 2626 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 LINC01546A6NGU7 62 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 CD300EQ496F6 205 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-201ENST00000269318 VAMP8Q9BV40 100 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 MAP1LC3AQ9H492 121 aa12.32□□□□□ -0.44
CCDC40-201ENST00000269318 KNCNA6PVL3 124 aa12.31□□□□□ -0.44
CCDC40-201ENST00000269318 SYS1-DBNDD2H3BUS1 97 aa12.31□□□□□ -0.44
CCDC40-201ENST00000269318 HLA-DRB4P13762 266 aa12.31□□□□□ -0.44
CCDC40-201ENST00000269318 NRACQ8N912 160 aa12.31□□□□□ -0.44
CCDC40-201ENST00000269318 C20orf144Q9BQM9 153 aa12.31□□□□□ -0.44
CCDC40-201ENST00000269318 HLA-DRB4X5D2U9 266 aa12.31□□□□□ -0.44
CCDC40-201ENST00000269318 HSPB8Q9UJY1 196 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 PAM16Q9Y3D7 125 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 AGRNO00468 2067 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 TRAV26-2A0A0B4J265 109 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 H3BMM0 161 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 PROK1P58294 105 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 DEFB125Q8N687 156 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 OR2K2Q8NGT1 345 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 SPAG8Q99932 426 aaPredicted RBP12.3□□□□□ -0.44
CCDC40-201ENST00000269318 MAP6D1Q9H9H5 199 aa12.3□□□□□ -0.44
CCDC40-201ENST00000269318 ZNF256Q9Y2P7 627 aaPredicted RBP12.3□□□□□ -0.44
CCDC40-201ENST00000269318 HIVEP2P31629 2446 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 CD7P09564 240 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 MRAP2Q96G30 205 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 JMJD8Q96S16 334 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 ZNF747Q9BV97 191 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 TRAV25A0A0B4J276 109 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 IGHV3-16A0A0C4DH30 117 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 PRSS47A8MTI9 375 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 ZNF124Q15973 351 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 DPH3P1Q9H4G8 78 aa12.29□□□□□ -0.44
CCDC40-201ENST00000269318 IGLV2-18A0A075B6J9 118 aa12.28□□□□□ -0.44
CCDC40-201ENST00000269318 RBMY1BA6NDE4 496 aaKnown RBP12.28□□□□□ -0.44
CCDC40-201ENST00000269318 RBMY1EA6NEQ0 496 aaKnown RBP12.28□□□□□ -0.44
CCDC40-201ENST00000269318 ADARB2-AS1A8MUL3 147 aa12.28□□□□□ -0.44
CCDC40-201ENST00000269318 RBMY1DP0C7P1 496 aaKnown RBP12.28□□□□□ -0.44
CCDC40-201ENST00000269318 C14orf178Q8N769 122 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-201ENST00000269318 C9orf85Q96MD7 179 aa12.28□□□□□ -0.44
CCDC40-201ENST00000269318 MAP1LC3CQ9BXW4 147 aa12.28□□□□□ -0.44
CCDC40-201ENST00000269318 NXT2Q9NPJ8 142 aaKnown RBP12.28□□□□□ -0.44
CCDC40-201ENST00000269318 SORL1Q92673 2214 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 IGHV1OR15-1A0A075B7D0 117 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 OR4C46A6NHA9 309 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 DEFA6Q01524 100 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 ATOH7Q8N100 152 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 C14orf144Q96I85 54 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 AP1S3Q96PC3 154 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 NDUFAF3Q9BU61 184 aa12.27□□□□□ -0.44
CCDC40-201ENST00000269318 MUC4Q99102 2169 aa12.27□□□□□ -0.45
CCDC40-201ENST00000269318 HBDP02042 147 aa12.27□□□□□ -0.45
CCDC40-201ENST00000269318 RBMY1A1P0DJD3 496 aaKnown RBP12.27□□□□□ -0.45
CCDC40-201ENST00000269318 RBMY1CP0DJD4 496 aa12.27□□□□□ -0.45
CCDC40-201ENST00000269318 RBMY1FQ15415 496 aaKnown RBP12.27□□□□□ -0.45
CCDC40-201ENST00000269318 PET117Q6UWS5 81 aa12.27□□□□□ -0.45
CCDC40-201ENST00000269318 Q8N1Y9 231 aa12.27□□□□□ -0.45
CCDC40-201ENST00000269318 POM121L12Q8N7R1 296 aa12.27□□□□□ -0.45
CCDC40-201ENST00000269318 KIF25-AS1Q9Y6Z4 181 aa12.27□□□□□ -0.45
CCDC40-201ENST00000269318 FXYD7P58549 80 aa12.26□□□□□ -0.45
CCDC40-201ENST00000269318 Q8N8P6 123 aa12.26□□□□□ -0.45
CCDC40-201ENST00000269318 MDFICQ9P1T7 246 aa12.26□□□□□ -0.45
CCDC40-201ENST00000269318 SPATA45Q537H7 98 aa12.25□□□□□ -0.45
CCDC40-201ENST00000269318 NOTCH2Q04721 2471 aa12.25□□□□□ -0.45
CCDC40-201ENST00000269318 LINC00315P59091 139 aa12.25□□□□□ -0.45
CCDC40-201ENST00000269318 CTAG1AP78358 180 aa12.25□□□□□ -0.45
CCDC40-201ENST00000269318 INAFM1C9JVW0 142 aa12.24□□□□□ -0.45
CCDC40-201ENST00000269318 MAJINQ3KP22 176 aa12.24□□□□□ -0.45
CCDC40-201ENST00000269318 ODF3L2Q3SX64 289 aa12.24□□□□□ -0.45
CCDC40-201ENST00000269318 RASL10AQ92737 203 aa12.24□□□□□ -0.45
CCDC40-201ENST00000269318 TRAV9-2A0A087WT02 112 aa12.23□□□□□ -0.45
CCDC40-201ENST00000269318 C20orf202A1L168 122 aa12.23□□□□□ -0.45
CCDC40-201ENST00000269318 LINC01545Q5VT33 79 aa12.23□□□□□ -0.45
CCDC40-201ENST00000269318 MIEN1Q9BRT3 115 aa12.23□□□□□ -0.45
CCDC40-201ENST00000269318 FCER1GP30273 86 aa12.22□□□□□ -0.45
CCDC40-201ENST00000269318 KRTAP10-3P60369 221 aa12.22□□□□□ -0.45
CCDC40-201ENST00000269318 ZNF705AQ6ZN79 300 aaPredicted RBP12.22□□□□□ -0.45
CCDC40-201ENST00000269318 CLUHP3Q96NS8 147 aa12.22□□□□□ -0.45
CCDC40-201ENST00000269318 MCRIP2Q9BUT9 160 aaKnown RBP12.22□□□□□ -0.45
CCDC40-201ENST00000269318 JPT2Q9H910 190 aa12.22□□□□□ -0.45
CCDC40-201ENST00000269318 MGPP08493 103 aa12.21□□□□□ -0.45
CCDC40-201ENST00000269318 SETD2Q9BYW2 2564 aaPredicted RBP12.21□□□□□ -0.45
CCDC40-201ENST00000269318 TRGV11A0A075B6L2 103 aa12.21□□□□□ -0.46
CCDC40-201ENST00000269318 RPL39LQ96EH5 51 aaKnown RBP12.21□□□□□ -0.46
CCDC40-201ENST00000269318 C20orf78Q9BR46 151 aa12.21□□□□□ -0.46
CCDC40-201ENST00000269318 SMIM2Q9BVW6 85 aa12.21□□□□□ -0.46
CCDC40-201ENST00000269318 H0Y8G0 127 aa12.2□□□□□ -0.46
CCDC40-201ENST00000269318 SUMO2P61956 95 aaKnown RBP12.2□□□□□ -0.46
CCDC40-201ENST00000269318 NSUN5P1Q3KNT7 163 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms