RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 OR2K2Q8NGT1 345 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 MIEN1Q9BRT3 115 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 C16orf95Q9H693 158 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 AGRNO00468 2067 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 TRAV12-2A0A075B6T6 113 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 CDKN1BP46527 198 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 FXYD7P58549 80 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 PET117Q6UWS5 81 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 AMTNQ6UX39 209 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 LINC01006Q8NI28 216 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 SMR3AQ99954 134 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 TMEM160Q9NX00 188 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 HECTD1Q9ULT8 2610 aa13.72□□□□□ -0.21
HOXC11-201ENST00000243082 TRAV2A0A0B4J234 112 aa13.72□□□□□ -0.21
HOXC11-201ENST00000243082 TRAV9-2A0A087WT02 112 aa13.71□□□□□ -0.21
HOXC11-201ENST00000243082 SCGB2A2Q13296 93 aa13.71□□□□□ -0.21
HOXC11-201ENST00000243082 SPINK13Q1W4C9 94 aa13.71□□□□□ -0.21
HOXC11-201ENST00000243082 NXT2Q9NPJ8 142 aaKnown RBP13.71□□□□□ -0.21
HOXC11-201ENST00000243082 MTORP42345 2549 aa13.71□□□□□ -0.21
HOXC11-201ENST00000243082 IGLV2-18A0A075B6J9 118 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 OR4C46A6NHA9 309 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 PRSS47A8MTI9 375 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 NXPH4O95158 308 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 HBDP02042 147 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 TSPOP30536 169 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 DEFB131AP59861 70 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 FHL3Q13643 280 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 DEFB114Q30KQ6 69 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 ZNF705AQ6ZN79 300 aaPredicted RBP13.71□□□□□ -0.22
HOXC11-201ENST00000243082 DEFB125Q8N687 156 aa13.71□□□□□ -0.22
HOXC11-201ENST00000243082 A0A1W2PRX2 142 aa13.7□□□□□ -0.22
HOXC11-201ENST00000243082 C14orf178Q8N769 122 aaPredicted RBP13.7□□□□□ -0.22
HOXC11-201ENST00000243082 MRAP2Q96G30 205 aa13.7□□□□□ -0.22
HOXC11-201ENST00000243082 MCRIP2Q9BUT9 160 aaKnown RBP13.7□□□□□ -0.22
HOXC11-201ENST00000243082 DPH3P1Q9H4G8 78 aa13.7□□□□□ -0.22
HOXC11-201ENST00000243082 C20orf202A1L168 122 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 KNCNA6PVL3 124 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 CD7P09564 240 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 HILS1P60008 231 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 DYNLRB2Q8TF09 96 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 MUC4Q99102 2169 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 H0Y8G0 127 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 LINC01545Q5VT33 79 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 Q8N8P6 123 aa13.69□□□□□ -0.22
HOXC11-201ENST00000243082 ZNF418Q8TF45 676 aaPredicted RBP13.69□□□□□ -0.22
HOXC11-201ENST00000243082 CITED2Q99967 270 aaPredicted RBP13.69□□□□□ -0.22
HOXC11-201ENST00000243082 A8MTW9 85 aa13.68□□□□□ -0.22
HOXC11-201ENST00000243082 CCL24O00175 119 aa13.68□□□□□ -0.22
HOXC11-201ENST00000243082 IGLC3P0DOY3 106 aa13.68□□□□□ -0.22
HOXC11-201ENST00000243082 HLA-DRB4P13762 266 aa13.68□□□□□ -0.22
HOXC11-201ENST00000243082 IGLL1P15814 213 aa13.68□□□□□ -0.22
HOXC11-201ENST00000243082 CD300EQ496F6 205 aaPredicted RBP13.68□□□□□ -0.22
HOXC11-201ENST00000243082 HLA-DRB4X5D2U9 266 aa13.68□□□□□ -0.22
HOXC11-201ENST00000243082 IGHV3-16A0A0C4DH30 117 aa13.67□□□□□ -0.22
HOXC11-201ENST00000243082 H3BMM0 161 aa13.67□□□□□ -0.22
HOXC11-201ENST00000243082 ZNF124Q15973 351 aa13.67□□□□□ -0.22
HOXC11-201ENST00000243082 AP1S3Q96PC3 154 aa13.67□□□□□ -0.22
HOXC11-201ENST00000243082 TSSC4Q9Y5U2 329 aaPredicted RBP13.67□□□□□ -0.22
HOXC11-201ENST00000243082 IGHV1OR15-1A0A075B7D0 117 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 C9orf85Q96MD7 179 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 MDFICQ9P1T7 246 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 KIF25-AS1Q9Y6Z4 181 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 FCER1GP30273 86 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 Q8N1Y9 231 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 POM121L12Q8N7R1 296 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 RASL10AQ92737 203 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 MAP6D1Q9H9H5 199 aa13.66□□□□□ -0.22
HOXC11-201ENST00000243082 LINC00315P59091 139 aa13.65□□□□□ -0.22
HOXC11-201ENST00000243082 PMCHL2Q9BQD1 86 aa13.65□□□□□ -0.22
HOXC11-201ENST00000243082 ZNF256Q9Y2P7 627 aaPredicted RBP13.65□□□□□ -0.22
HOXC11-201ENST00000243082 RBMY1BA6NDE4 496 aaKnown RBP13.64□□□□□ -0.23
HOXC11-201ENST00000243082 RBMY1EA6NEQ0 496 aaKnown RBP13.64□□□□□ -0.23
HOXC11-201ENST00000243082 LY6G6DO95868 133 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 RBMY1DP0C7P1 496 aaKnown RBP13.64□□□□□ -0.23
HOXC11-201ENST00000243082 UQCR10Q9UDW1 63 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 EREGO14944 169 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 MGPP08493 103 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 RBMY1A1P0DJD3 496 aaKnown RBP13.64□□□□□ -0.23
HOXC11-201ENST00000243082 RBMY1CP0DJD4 496 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 RBMY1FQ15415 496 aaKnown RBP13.64□□□□□ -0.23
HOXC11-201ENST00000243082 IFI27L1Q96BM0 104 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 SPAG8Q99932 426 aaPredicted RBP13.64□□□□□ -0.23
HOXC11-201ENST00000243082 SNHG12Q9BXW3 62 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 JPT2Q9H910 190 aa13.64□□□□□ -0.23
HOXC11-201ENST00000243082 hDV102S1A0JD36 115 aa13.63□□□□□ -0.23
HOXC11-201ENST00000243082 TMEM158Q8WZ71 300 aa13.63□□□□□ -0.23
HOXC11-201ENST00000243082 RPL39LQ96EH5 51 aaKnown RBP13.63□□□□□ -0.23
HOXC11-201ENST00000243082 OTOGQ6ZRI0 2925 aa13.62□□□□□ -0.23
HOXC11-201ENST00000243082 HIVEP2P31629 2446 aa13.62□□□□□ -0.23
HOXC11-201ENST00000243082 NDUFA7O95182 113 aa13.62□□□□□ -0.23
HOXC11-201ENST00000243082 SMIM2Q9BVW6 85 aa13.62□□□□□ -0.23
HOXC11-201ENST00000243082 SETD2Q9BYW2 2564 aaPredicted RBP13.62□□□□□ -0.23
HOXC11-201ENST00000243082 TRAV25A0A0B4J276 109 aa13.61□□□□□ -0.23
HOXC11-201ENST00000243082 TCAPO15273 167 aa13.61□□□□□ -0.23
HOXC11-201ENST00000243082 LAGE3Q14657 143 aa13.61□□□□□ -0.23
HOXC11-201ENST00000243082 C20orf78Q9BR46 151 aa13.61□□□□□ -0.23
HOXC11-201ENST00000243082 M0R143 59 aa13.61□□□□□ -0.23
HOXC11-201ENST00000243082 SUMO2P61956 95 aaKnown RBP13.61□□□□□ -0.23
HOXC11-201ENST00000243082 LGALS9BQ3B8N2 356 aa13.61□□□□□ -0.23
HOXC11-201ENST00000243082 LBHQ53QV2 105 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms