RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CKS2P33552 79 aa16.77■□□□□ 0.28
CDX1-201ENST00000231656 EBLN2Q6P2I7 272 aa16.77■□□□□ 0.28
CDX1-201ENST00000231656 MED14OSP0DP75 135 aa16.77■□□□□ 0.27
CDX1-201ENST00000231656 LEPP41159 167 aa16.77■□□□□ 0.27
CDX1-201ENST00000231656 TRAV2A0A0B4J234 112 aa16.76■□□□□ 0.27
CDX1-201ENST00000231656 ASIPP42127 132 aa16.76■□□□□ 0.27
CDX1-201ENST00000231656 NCR2O95944 276 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 NPYP01303 97 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 PPBPP02775 128 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 SPANXN1Q5VSR9 72 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 FOXI2Q6ZQN5 318 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 PRSS3P2Q8NHM4 247 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 SPATA3Q8NHX4 192 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 SCRT2Q9NQ03 307 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 NOTCH3Q9UM47 2321 aa16.75■□□□□ 0.27
CDX1-201ENST00000231656 TRAV25A0A0B4J276 109 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 EVI2AP22794 236 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 IFI27P40305 119 aaPredicted RBP16.74■□□□□ 0.27
CDX1-201ENST00000231656 SHISA2Q6UWI4 295 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 AP5S1Q9NUS5 200 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 AGRNO00468 2067 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 C7orf71A4D174 169 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 GNRH2O43555 120 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 DUSP14O95147 198 aaKnown RBP16.74■□□□□ 0.27
CDX1-201ENST00000231656 IGLV1-51P01701 117 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 FA2HQ7L5A8 372 aa16.74■□□□□ 0.27
CDX1-201ENST00000231656 SPAG8Q99932 426 aaPredicted RBP16.73■□□□□ 0.27
CDX1-201ENST00000231656 TIMM8BQ9Y5J9 83 aaPredicted RBP16.73■□□□□ 0.27
CDX1-201ENST00000231656 LOC389332A0A1B0GUA5 103 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 GAS8-AS1O95177 125 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 RNASE3P12724 160 aaKnown RBP16.72■□□□□ 0.27
CDX1-201ENST00000231656 S100A4P26447 101 aaKnown RBP16.72■□□□□ 0.27
CDX1-201ENST00000231656 TDRG1Q3Y452 100 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 SMIM15Q7Z3B0 74 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 KIR2DL5BA0A0G2JN68 375 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 KIR2DL5BA0A0G2JPC4 375 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 IGKV3-20P01619 116 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 BTF3P20290 206 aaKnown RBP16.72■□□□□ 0.27
CDX1-201ENST00000231656 LINC00173Q6ZV60 143 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 KIR2DL5AQ8N109 375 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 LAMTOR2Q9Y2Q5 125 aa16.72■□□□□ 0.27
CDX1-201ENST00000231656 TRAV12-3A0A0B4J271 114 aa16.71■□□□□ 0.27
CDX1-201ENST00000231656 LEPROTL1O95214 131 aa16.71■□□□□ 0.27
CDX1-201ENST00000231656 DDTP30046 118 aa16.71■□□□□ 0.27
CDX1-201ENST00000231656 AMTNQ6UX39 209 aa16.71■□□□□ 0.27
CDX1-201ENST00000231656 ZNF256Q9Y2P7 627 aaPredicted RBP16.71■□□□□ 0.27
CDX1-201ENST00000231656 OR4C46A6NHA9 309 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 SPRY2O43597 315 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 TSPOP30536 169 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 FAM159AQ6UWV7 190 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 PHLDA3Q9Y5J5 127 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 CDKN1BP46527 198 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 DEFB131AP59861 70 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 OR2K2Q8NGT1 345 aa16.69■□□□□ 0.26
CDX1-201ENST00000231656 TRAV12-2A0A075B6T6 113 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 A8MTW9 85 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 M0R381 172 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 NXPH4O95158 308 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 TNFRSF6BO95407 300 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 GATA1P15976 413 aaPredicted RBP16.68■□□□□ 0.26
CDX1-201ENST00000231656 SPINK13Q1W4C9 94 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 SPATA12Q7Z6I5 190 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 WFDC9Q8NEX5 89 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 TMEM70Q9BUB7 260 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 VAMP8Q9BV40 100 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 MAP1LC3AQ9H492 121 aa16.68■□□□□ 0.26
CDX1-201ENST00000231656 A0A096LNJ9 63 aa16.67■□□□□ 0.26
CDX1-201ENST00000231656 KNCNA6PVL3 124 aa16.67■□□□□ 0.26
CDX1-201ENST00000231656 LURAP1LQ8IV03 231 aa16.67■□□□□ 0.26
CDX1-201ENST00000231656 MUC4Q99102 2169 aa16.67■□□□□ 0.26
CDX1-201ENST00000231656 CRXO43186 299 aaPredicted RBP16.66■□□□□ 0.26
CDX1-201ENST00000231656 INSL3P51460 131 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 C9orf66Q5T8R8 295 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 LINC01546A6NGU7 62 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 HLA-DRB4P13762 266 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 NRACQ8N912 160 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 C20orf144Q9BQM9 153 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 HSPB8Q9UJY1 196 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 HLA-DRB4X5D2U9 266 aa16.66■□□□□ 0.26
CDX1-201ENST00000231656 SYS1-DBNDD2H3BUS1 97 aa16.65■□□□□ 0.26
CDX1-201ENST00000231656 MAP6D1Q9H9H5 199 aa16.65■□□□□ 0.26
CDX1-201ENST00000231656 PAM16Q9Y3D7 125 aa16.65■□□□□ 0.26
CDX1-201ENST00000231656 H3BMM0 161 aa16.64■□□□□ 0.25
CDX1-201ENST00000231656 CD7P09564 240 aa16.64■□□□□ 0.25
CDX1-201ENST00000231656 MRAP2Q96G30 205 aa16.64■□□□□ 0.25
CDX1-201ENST00000231656 MCRIP2Q9BUT9 160 aaKnown RBP16.64■□□□□ 0.25
CDX1-201ENST00000231656 ANK2Q01484 3957 aa16.63■□□□□ 0.25
CDX1-201ENST00000231656 TRAV26-2A0A0B4J265 109 aa16.63■□□□□ 0.25
CDX1-201ENST00000231656 DEFB125Q8N687 156 aa16.63■□□□□ 0.25
CDX1-201ENST00000231656 DPH3P1Q9H4G8 78 aa16.63■□□□□ 0.25
CDX1-201ENST00000231656 IGHV3-16A0A0C4DH30 117 aa16.62■□□□□ 0.25
CDX1-201ENST00000231656 PRSS47A8MTI9 375 aa16.62■□□□□ 0.25
CDX1-201ENST00000231656 ZNF124Q15973 351 aa16.62■□□□□ 0.25
CDX1-201ENST00000231656 ODF3L2Q3SX64 289 aa16.62■□□□□ 0.25
CDX1-201ENST00000231656 MDFIQ99750 246 aa16.62■□□□□ 0.25
CDX1-201ENST00000231656 MAP1LC3CQ9BXW4 147 aa16.62■□□□□ 0.25
CDX1-201ENST00000231656 NXT2Q9NPJ8 142 aaKnown RBP16.62■□□□□ 0.25
CDX1-201ENST00000231656 IGHV1OR15-1A0A075B7D0 117 aa16.61■□□□□ 0.25
CDX1-201ENST00000231656 RBMY1BA6NDE4 496 aaKnown RBP16.61■□□□□ 0.25
CDX1-201ENST00000231656 RBMY1EA6NEQ0 496 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms