RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	KCNS1	Q96KK3	526 aa		10.46	□□□□□ -0.73
PHGDH-231	ENST00000641939	C8orf49	Q96NF6	230 aa		10.46	□□□□□ -0.73
PHGDH-231	ENST00000641939	ZNF471	Q9BX82	626 aa	Predicted RBP	10.46	□□□□□ -0.73
PHGDH-231	ENST00000641939	SDF2L1	Q9HCN8	221 aa		10.46	□□□□□ -0.73
PHGDH-231	ENST00000641939	LINC00588	Q9Y4M8	146 aa		10.46	□□□□□ -0.73
PHGDH-231	ENST00000641939	IGHV3-16	A0A0C4DH30	117 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	GCG	P01275	180 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	TYMS	P04818	313 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	ZNF80	P51504	273 aa	Predicted RBP	10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	ZFP69	Q49AA0	526 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	SMUG1	Q53HV7	270 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	SAPCD1	Q5SSQ6	148 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	LINC00336	Q6ZUF6	198 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	STOML3	Q8TAV4	291 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	RASL10A	Q92737	203 aa		10.45	□□□□□ -0.74
PHGDH-231	ENST00000641939	TRAV34	A0A0B4J273	112 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	UMAD1	C9J7I0	102 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	PEX7	O00628	323 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	PFN1	P07737	140 aa	Known RBP	10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	FHIT	P49789	147 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	PPT1	P50897	306 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	EIF5A	P63241	154 aa	Known RBP	10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	TMUB2	Q71RG4	321 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	ZNRF2	Q8NHG8	242 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	HIST1H2BA	Q96A08	127 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	LINC00479	Q96M42	142 aa		10.44	□□□□□ -0.74
PHGDH-231	ENST00000641939	PAX4	O43316	350 aa		10.43	□□□□□ -0.74
PHGDH-231	ENST00000641939	PFDN1	O60925	122 aa		10.43	□□□□□ -0.74
PHGDH-231	ENST00000641939	SLA	Q13239	276 aa		10.43	□□□□□ -0.74
PHGDH-231	ENST00000641939	FAM213B	Q8TBF2	198 aa		10.43	□□□□□ -0.74
PHGDH-231	ENST00000641939	PRO0255	Q9UI72	69 aa		10.43	□□□□□ -0.74
PHGDH-231	ENST00000641939		A0A096LPF7	62 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939		M0R2P5	195 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	RTL8C	O15255	209 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	FHL2	Q14192	279 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	ESRG	Q1W209	222 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	DPPA3	Q6W0C5	159 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	SFT2D1	Q8WV19	159 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	MBD3L1	Q8WWY6	194 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	C11orf21	Q9P2W6	132 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	HHLA3	Q9XRX5	114 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	ARL2-SNX15	V9GYD0	113 aa		10.42	□□□□□ -0.74
PHGDH-231	ENST00000641939	TRGV4	A0A0C4DH28	118 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	SFTA3	P0C7M3	94 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	TPT1	P13693	172 aa	Known RBP	10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	CRYBA4	P53673	196 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	CST9LP1	Q5W188	147 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939		Q86TA4	180 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	TCTE3	Q8IZS6	198 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	ZNF479	Q96JC4	524 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	TCEAL7	Q9BRU2	100 aa		10.41	□□□□□ -0.74
PHGDH-231	ENST00000641939	TRAV4	A0A0B4J268	109 aa		10.4	□□□□□ -0.74
PHGDH-231	ENST00000641939	NBDY	A0A0U1RRE5	68 aa		10.4	□□□□□ -0.74
PHGDH-231	ENST00000641939	SOHLH1	Q5JUK2	328 aa		10.4	□□□□□ -0.74
PHGDH-231	ENST00000641939	C1orf134	Q5TEV5	83 aa		10.4	□□□□□ -0.74
PHGDH-231	ENST00000641939		Q6ZNX1	250 aa		10.4	□□□□□ -0.74
PHGDH-231	ENST00000641939	UPK3B	Q9BT76	320 aa		10.4	□□□□□ -0.74
PHGDH-231	ENST00000641939	ICOS	Q9Y6W8	199 aa		10.4	□□□□□ -0.74
PHGDH-231	ENST00000641939	PKHD1	P08F94	4074 aa		10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939		A0A1B0GV50	99 aa		10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939	PRSS29P	A6NIE9	313 aa		10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939	PAGE4	O60829	102 aa		10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939	OR4C5	Q8NGB2	326 aa		10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939	FMC1	Q96HJ9	113 aa		10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939		Q9H8V8	135 aa		10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939	MRPS16	Q9Y3D3	137 aa	Known RBP	10.39	□□□□□ -0.75
PHGDH-231	ENST00000641939	FABP5P3	A8MUU1	101 aa		10.38	□□□□□ -0.75
PHGDH-231	ENST00000641939	H2AFB1	P0C5Y9	115 aa		10.38	□□□□□ -0.75
PHGDH-231	ENST00000641939	UBE2G1	P62253	170 aa		10.38	□□□□□ -0.75
PHGDH-231	ENST00000641939	LGALSL	Q3ZCW2	172 aa	Predicted RBP	10.38	□□□□□ -0.75
PHGDH-231	ENST00000641939	ZNF876P	Q49A33	203 aa		10.38	□□□□□ -0.75
PHGDH-231	ENST00000641939	C9orf85	Q96MD7	179 aa		10.38	□□□□□ -0.75
PHGDH-231	ENST00000641939	ZFP30	Q9Y2G7	519 aa		10.38	□□□□□ -0.75
PHGDH-231	ENST00000641939	PKD1	P98161	4303 aa		10.37	□□□□□ -0.75
PHGDH-231	ENST00000641939		C9JCJ5	164 aa		10.37	□□□□□ -0.75
PHGDH-231	ENST00000641939	MRPL23	Q16540	153 aa	Known RBP	10.37	□□□□□ -0.75
PHGDH-231	ENST00000641939	COX8C	Q7Z4L0	72 aa		10.37	□□□□□ -0.75
PHGDH-231	ENST00000641939	IGKV3D-20	A0A0C4DH25	116 aa		10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939	TRBV6-1	A0A0K0K1D8	114 aa		10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939	C1QB	P02746	253 aa		10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939	RNASE3	P12724	160 aa	Known RBP	10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939	AKR1C3	P42330	323 aa		10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939	EIF5AL1	Q6IS14	154 aa	Known RBP	10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939	PCNP	Q8WW12	178 aa	Known RBP	10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939	ZC2HC1A	Q96GY0	325 aa		10.36	□□□□□ -0.75
PHGDH-231	ENST00000641939		A0A1B0GVY2	172 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939		K7EQD1	137 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	LTA	P01374	205 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	ORM1	P02763	201 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	GYPE	P15421	78 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	RAB5C	P51148	216 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	TTC32	Q5I0X7	151 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	FAM162B	Q5T6X4	162 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	NEGR1	Q7Z3B1	354 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	C6orf223	Q8N319	242 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939	PTH2	Q96A98	100 aa		10.35	□□□□□ -0.75
PHGDH-231	ENST00000641939		B4DEV8	164 aa		10.34	□□□□□ -0.75
PHGDH-231	ENST00000641939	RS1	O15537	224 aa		10.34	□□□□□ -0.75
PHGDH-231	ENST00000641939	CIDEA	O60543	219 aa		10.34	□□□□□ -0.75
PHGDH-231	ENST00000641939	SH2D1A	O60880	128 aa		10.34	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 1138.6 ms