RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ITLN2Q8WWU7 325 aaPredicted RBP15.35■□□□□ 0.05
SYNGAP1-227ENST00000638142 LMO4P61968 165 aa15.34■□□□□ 0.05
SYNGAP1-227ENST00000638142 Q6ZQT7 251 aa15.34■□□□□ 0.05
SYNGAP1-227ENST00000638142 SMIM2Q9BVW6 85 aa15.34■□□□□ 0.05
SYNGAP1-227ENST00000638142 E9PLD3 99 aa15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 TAL2Q16559 108 aa15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 PRR9Q5T870 116 aa15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 NHP2Q9NX24 153 aaKnown RBP15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 TRAV12-1A0A0B4J245 112 aa15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 TRAV41A0A0B4J266 112 aa15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 RPL24P83731 157 aaKnown RBP15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 C19orf54Q5BKX5 351 aa15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 LINC00477Q96M19 166 aa15.33■□□□□ 0.04
SYNGAP1-227ENST00000638142 NCOR2Q9Y618 2525 aa15.32■□□□□ 0.04
SYNGAP1-227ENST00000638142 RELNP78509 3460 aa15.32■□□□□ 0.04
SYNGAP1-227ENST00000638142 TEX48A0A1B0GUV7 120 aa15.32■□□□□ 0.04
SYNGAP1-227ENST00000638142 MOB4Q9Y3A3 225 aa15.32■□□□□ 0.04
SYNGAP1-227ENST00000638142 CRIP2P52943 208 aaPredicted RBP15.32■□□□□ 0.04
SYNGAP1-227ENST00000638142 UBTD1Q9HAC8 227 aa15.32■□□□□ 0.04
SYNGAP1-227ENST00000638142 ORMDL2Q53FV1 153 aa15.31■□□□□ 0.04
SYNGAP1-227ENST00000638142 C20orf173Q96LM9 149 aa15.31■□□□□ 0.04
SYNGAP1-227ENST00000638142 BPESC1Q9GZL8 116 aa15.31■□□□□ 0.04
SYNGAP1-227ENST00000638142 MED13LQ71F56 2210 aa15.31■□□□□ 0.04
SYNGAP1-227ENST00000638142 TRAV21A0A0B4J279 112 aa15.3■□□□□ 0.04
SYNGAP1-227ENST00000638142 F8VRH5 84 aa15.3■□□□□ 0.04
SYNGAP1-227ENST00000638142 H7C1H1 209 aa15.3■□□□□ 0.04
SYNGAP1-227ENST00000638142 SLC25A16P16260 332 aa15.3■□□□□ 0.04
SYNGAP1-227ENST00000638142 ARL3P36405 182 aa15.3■□□□□ 0.04
SYNGAP1-227ENST00000638142 MAPKAPK5-AS1Q8N8E1 139 aa15.3■□□□□ 0.04
SYNGAP1-227ENST00000638142 CACNA1AO00555 2505 aa15.3■□□□□ 0.04
SYNGAP1-227ENST00000638142 IGLL5B9A064 214 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 K7EMI3 77 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 ZFAND2AQ8N6M9 145 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 C20orf78Q9BR46 151 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 CACNA1BQ00975 2339 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 NBASA2RRP1 2371 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 OVOL1O14753 267 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 FOXI2Q6ZQN5 318 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 TMEM219Q86XT9 240 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 OR10J6PQ8NGY7 276 aa15.29■□□□□ 0.04
SYNGAP1-227ENST00000638142 F8W1H4 67 aa15.28■□□□□ 0.04
SYNGAP1-227ENST00000638142 SUMO2P61956 95 aaKnown RBP15.28■□□□□ 0.04
SYNGAP1-227ENST00000638142 RAXQ9Y2V3 346 aa15.28■□□□□ 0.04
SYNGAP1-227ENST00000638142 TOMM6Q96B49 74 aa15.28■□□□□ 0.04
SYNGAP1-227ENST00000638142 DPH3P1Q9H4G8 78 aa15.28■□□□□ 0.04
SYNGAP1-227ENST00000638142 NDUFA4O00483 81 aa15.27■□□□□ 0.04
SYNGAP1-227ENST00000638142 IGF1P05019 195 aa15.27■□□□□ 0.04
SYNGAP1-227ENST00000638142 GPHB5Q86YW7 130 aa15.27■□□□□ 0.04
SYNGAP1-227ENST00000638142 M0R381 172 aa15.27■□□□□ 0.03
SYNGAP1-227ENST00000638142 MED14OSP0DP75 135 aa15.27■□□□□ 0.03
SYNGAP1-227ENST00000638142 ASIPP42127 132 aa15.27■□□□□ 0.03
SYNGAP1-227ENST00000638142 RASL10AQ92737 203 aa15.27■□□□□ 0.03
SYNGAP1-227ENST00000638142 SOCS3O14543 225 aa15.26■□□□□ 0.03
SYNGAP1-227ENST00000638142 S100A4P26447 101 aaKnown RBP15.26■□□□□ 0.03
SYNGAP1-227ENST00000638142 C12orf74Q32Q52 190 aa15.26■□□□□ 0.03
SYNGAP1-227ENST00000638142 SCGB3A1Q96QR1 104 aa15.26■□□□□ 0.03
SYNGAP1-227ENST00000638142 SAMD13Q5VXD3 122 aa15.26■□□□□ 0.03
SYNGAP1-227ENST00000638142 ZNF479Q96JC4 524 aa15.26■□□□□ 0.03
SYNGAP1-227ENST00000638142 CHTOPQ9Y3Y2 248 aaKnown RBP15.26■□□□□ 0.03
SYNGAP1-227ENST00000638142 LINC01619G3V211 115 aa15.25■□□□□ 0.03
SYNGAP1-227ENST00000638142 J3KRW8 73 aa15.25■□□□□ 0.03
SYNGAP1-227ENST00000638142 UNQ9165/PRO28630Q6UXU0 137 aa15.25■□□□□ 0.03
SYNGAP1-227ENST00000638142 SPANXB1Q9NS25 103 aaPredicted RBP15.25■□□□□ 0.03
SYNGAP1-227ENST00000638142 LINC00527Q9UJ94 153 aa15.25■□□□□ 0.03
SYNGAP1-227ENST00000638142 PHLDA3Q9Y5J5 127 aa15.25■□□□□ 0.03
SYNGAP1-227ENST00000638142 SCGB1A1P11684 91 aa15.25■□□□□ 0.03
SYNGAP1-227ENST00000638142 NEXN-AS1Q8NBZ9 246 aa15.24■□□□□ 0.03
SYNGAP1-227ENST00000638142 OR11H12B2RN74 326 aa15.24■□□□□ 0.03
SYNGAP1-227ENST00000638142 OR11H1Q8NG94 326 aa15.24■□□□□ 0.03
SYNGAP1-227ENST00000638142 OR11H2Q8NH07 326 aa15.24■□□□□ 0.03
SYNGAP1-227ENST00000638142 HIST1H4GQ99525 98 aa15.24■□□□□ 0.03
SYNGAP1-227ENST00000638142 CHD8Q9HCK8 2581 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 FAM19A4Q96LR4 140 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 J3QR89 54 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 TRBV12-3P01733 135 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 WFDC2Q14508 124 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 ANXA2RQ3ZCQ2 193 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 APRG1Q8IVJ8 170 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 C14orf178Q8N769 122 aaPredicted RBP15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 KLK15Q9H2R5 256 aa15.23■□□□□ 0.03
SYNGAP1-227ENST00000638142 TRBV7-3A0A075B6L6 115 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 TRBV7-9A0A0J9YWB2 115 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 PPP1R17O96001 155 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 RPL39LQ96EH5 51 aaKnown RBP15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 MYMXA0A1B0GTQ4 84 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 A0A1B0GWB2 263 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 BRI3O95415 125 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 CD300EQ496F6 205 aaPredicted RBP15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 SIGMAR1Q99720 223 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 SPOCK3Q9BQ16 436 aa15.22■□□□□ 0.03
SYNGAP1-227ENST00000638142 IGHV1-69DA0A0B4J2H0 117 aa15.21■□□□□ 0.03
SYNGAP1-227ENST00000638142 H3BUA1 57 aa15.21■□□□□ 0.03
SYNGAP1-227ENST00000638142 IGHV1-69P01742 117 aa15.21■□□□□ 0.03
SYNGAP1-227ENST00000638142 RRN3P1Q2M238 152 aa15.21■□□□□ 0.03
SYNGAP1-227ENST00000638142 USMG5Q96IX5 58 aa15.21■□□□□ 0.03
SYNGAP1-227ENST00000638142 CIDEAO60543 219 aa15.21■□□□□ 0.02
SYNGAP1-227ENST00000638142 C2orf66Q6UXQ4 117 aa15.21■□□□□ 0.02
SYNGAP1-227ENST00000638142 AGRNO00468 2067 aa15.2■□□□□ 0.02
SYNGAP1-227ENST00000638142 RNF223E7ERA6 249 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 146.8 ms