RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ZNRF2Q8NHG8 242 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 TVP23CQ96ET8 276 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 C18orf15Q96N68 181 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 SPXQ9BT56 116 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 SDF2L1Q9HCN8 221 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 EPDR1Q9UM22 224 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 PSG8Q9UQ74 426 aa8.08□□□□□ -1.12
CLN3-257ENST00000637110 NBDYA0A0U1RRE5 68 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 H3BNG1 76 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 ESRGQ1W209 222 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 SUN5Q8TC36 379 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 VSIG2Q96IQ7 327 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 KCNS1Q96KK3 526 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 C8orf49Q96NF6 230 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 Q9H8V8 135 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 HHLA3Q9XRX5 114 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 ICOSQ9Y6W8 199 aa8.07□□□□□ -1.12
CLN3-257ENST00000637110 A0A096LPF7 62 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 GGTLC3B5MD39 225 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 G3V3Q6 166 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 TYMSP04818 313 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 SFTA3P0C7M3 94 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 FLI1Q01543 452 aaPredicted RBP8.06□□□□□ -1.12
CLN3-257ENST00000637110 SLAQ13239 276 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 ZNF726P1Q15940 193 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 SMUG1Q53HV7 270 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 CYB561D1Q8N8Q1 229 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 STOML3Q8TAV4 291 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 PRO0255Q9UI72 69 aa8.06□□□□□ -1.12
CLN3-257ENST00000637110 TRAV34A0A0B4J273 112 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 IGHV3-16A0A0C4DH30 117 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 KANTRA0A1W2PQU2 76 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 A0A1W2PRE2 83 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 MAP1LC3B2A6NCE7 125 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 M0R2P5 195 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 GCGP01275 180 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 PPT1P50897 306 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 SAPCD1Q5SSQ6 148 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 TMEM75Q8N9X5 138 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 OR4C5Q8NGB2 326 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 PCNPQ8WW12 178 aaKnown RBP8.05□□□□□ -1.12
CLN3-257ENST00000637110 MAP1LC3BQ9GZQ8 125 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 CYTL1Q9NRR1 136 aa8.05□□□□□ -1.12
CLN3-257ENST00000637110 FBLL1A6NHQ2 334 aaKnown RBP8.04□□□□□ -1.12
CLN3-257ENST00000637110 C9JCJ5 164 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 ZNF80P51504 273 aaPredicted RBP8.04□□□□□ -1.12
CLN3-257ENST00000637110 CRYBA4P53673 196 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 FHL2Q14192 279 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 TDRG1Q3Y452 100 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 TTC32Q5I0X7 151 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 C6orf223Q8N319 242 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 KCNRGQ8N5I3 272 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 RASL10AQ92737 203 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 ZNF479Q96JC4 524 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 LINC00479Q96M42 142 aa8.04□□□□□ -1.12
CLN3-257ENST00000637110 ZNF471Q9BX82 626 aaPredicted RBP8.04□□□□□ -1.12
CLN3-257ENST00000637110 MRPS16Q9Y3D3 137 aaKnown RBP8.04□□□□□ -1.12
CLN3-257ENST00000637110 A0A0D9SG52 128 aa8.03□□□□□ -1.12
CLN3-257ENST00000637110 A0A1B0GV50 99 aa8.03□□□□□ -1.12
CLN3-257ENST00000637110 PEX7O00628 323 aa8.03□□□□□ -1.12
CLN3-257ENST00000637110 PFDN1O60925 122 aa8.03□□□□□ -1.12
CLN3-257ENST00000637110 PFN1P07737 140 aaKnown RBP8.03□□□□□ -1.12
CLN3-257ENST00000637110 MRPL23Q16540 153 aaKnown RBP8.03□□□□□ -1.12
CLN3-257ENST00000637110 CST9LP1Q5W188 147 aa8.03□□□□□ -1.12
CLN3-257ENST00000637110 NKX6-2Q9C056 277 aaPredicted RBP8.03□□□□□ -1.12
CLN3-257ENST00000637110 TRAV4A0A0B4J268 109 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 FAM74A7A6NL05 159 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 IGLV2-11P01706 119 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 GYPEP15421 78 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 S100A4P26447 101 aaKnown RBP8.02□□□□□ -1.13
CLN3-257ENST00000637110 SRIP30626 198 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 UBE2G1P62253 170 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 EIF5AP63241 154 aaKnown RBP8.02□□□□□ -1.13
CLN3-257ENST00000637110 ZNF345Q14585 488 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 ZNF876PQ49A33 203 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 FAM213BQ8TBF2 198 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 UPK3BQ9BT76 320 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 ARL2-SNX15V9GYD0 113 aa8.02□□□□□ -1.13
CLN3-257ENST00000637110 HMSDA8MTL9 139 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 BCL2L11O43521 198 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 FHITP49789 147 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 NEGR1Q7Z3B1 354 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 OR11H4Q8NGC9 324 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 SFT2D1Q8WV19 159 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 HIST1H2BAQ96A08 127 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 C11orf21Q9P2W6 132 aa8.01□□□□□ -1.13
CLN3-257ENST00000637110 LRP1BQ9NZR2 4599 aa8□□□□□ -1.13
CLN3-257ENST00000637110 IGHV3-73A0A0B4J1V6 119 aa8□□□□□ -1.13
CLN3-257ENST00000637110 FABP5P3A8MUU1 101 aa8□□□□□ -1.13
CLN3-257ENST00000637110 EPM2AB3EWF7 344 aa8□□□□□ -1.13
CLN3-257ENST00000637110 SIVA1O15304 175 aa8□□□□□ -1.13
CLN3-257ENST00000637110 NXPH4O95158 308 aa8□□□□□ -1.13
CLN3-257ENST00000637110 ORM1P02763 201 aa8□□□□□ -1.13
CLN3-257ENST00000637110 SEC11BP0C7V7 166 aa8□□□□□ -1.13
CLN3-257ENST00000637110 LYPD5Q6UWN5 251 aa8□□□□□ -1.13
CLN3-257ENST00000637110 Q86TA4 180 aa8□□□□□ -1.13
CLN3-257ENST00000637110 NHLRC2Q8NBF2 726 aa8□□□□□ -1.13
CLN3-257ENST00000637110 APOBP04114 4563 aaKnown RBP7.99□□□□□ -1.13
CLN3-257ENST00000637110 UMAD1C9J7I0 102 aa7.99□□□□□ -1.13
CLN3-257ENST00000637110 K7EQD1 137 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms