RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 HIST1H1AQ02539 215 aaPredicted RBP11.84□□□□□ -0.51
CLN3-251ENST00000636853 MSRB1Q9NZV6 116 aa11.84□□□□□ -0.51
CLN3-251ENST00000636853 OR10J6PQ8NGY7 276 aa11.83□□□□□ -0.52
CLN3-251ENST00000636853 TMEM70Q9BUB7 260 aa11.83□□□□□ -0.52
CLN3-251ENST00000636853 OVOL1O14753 267 aa11.83□□□□□ -0.52
CLN3-251ENST00000636853 FAM104BQ5XKR9 115 aa11.83□□□□□ -0.52
CLN3-251ENST00000636853 WFDC3Q8IUB2 231 aa11.83□□□□□ -0.52
CLN3-251ENST00000636853 CHCHD1Q96BP2 118 aaKnown RBP11.83□□□□□ -0.52
CLN3-251ENST00000636853 UFC1Q9Y3C8 167 aa11.83□□□□□ -0.52
CLN3-251ENST00000636853 CCDC168Q8NDH2 2452 aa11.82□□□□□ -0.52
CLN3-251ENST00000636853 ELANEP08246 267 aa11.82□□□□□ -0.52
CLN3-251ENST00000636853 OR4C5Q8NGB2 326 aa11.82□□□□□ -0.52
CLN3-251ENST00000636853 LINC00477Q96M19 166 aa11.82□□□□□ -0.52
CLN3-251ENST00000636853 IGHV4OR15-8A0A075B7B6 117 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 A0A087WW49 117 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 D6R8Y8 96 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 LGALS1P09382 135 aaKnown RBP11.81□□□□□ -0.52
CLN3-251ENST00000636853 SYNJ2BPP57105 145 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 MAJINQ3KP22 176 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 MYOZ3Q8TDC0 251 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 IGHV1-24A0A0C4DH33 117 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 ATOH7Q8N100 152 aa11.81□□□□□ -0.52
CLN3-251ENST00000636853 MRPL51Q4U2R6 128 aaKnown RBP11.8□□□□□ -0.52
CLN3-251ENST00000636853 ZFAND2AQ8N6M9 145 aa11.8□□□□□ -0.52
CLN3-251ENST00000636853 OR8A1Q8NGG7 326 aa11.8□□□□□ -0.52
CLN3-251ENST00000636853 SONP18583 2426 aaKnown RBP11.8□□□□□ -0.52
CLN3-251ENST00000636853 C18orf65Q6ZTR6 163 aa11.8□□□□□ -0.52
CLN3-251ENST00000636853 UBE2E2Q96LR5 201 aa11.8□□□□□ -0.52
CLN3-251ENST00000636853 LENEPQ9Y5L5 61 aa11.8□□□□□ -0.52
CLN3-251ENST00000636853 OR5AL1P0C617 328 aa11.79□□□□□ -0.52
CLN3-251ENST00000636853 C12orf54Q6X4T0 127 aa11.79□□□□□ -0.52
CLN3-251ENST00000636853 DCANP1Q8TF63 244 aa11.79□□□□□ -0.52
CLN3-251ENST00000636853 CNFNQ9BYD5 112 aa11.79□□□□□ -0.52
CLN3-251ENST00000636853 SMKR1H3BMG3 65 aa11.79□□□□□ -0.52
CLN3-251ENST00000636853 KIR3DS1Q14943 382 aa11.79□□□□□ -0.52
CLN3-251ENST00000636853 DEFB125Q8N687 156 aa11.79□□□□□ -0.52
CLN3-251ENST00000636853 LOC389332A0A1B0GUA5 103 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 HOXD3P31249 432 aaPredicted RBP11.78□□□□□ -0.52
CLN3-251ENST00000636853 LINC00173Q6ZV60 143 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 ORMDL3Q8N138 153 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 Q8N2B8 174 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 RNF152Q8N8N0 203 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 PRELID3AQ96N28 172 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 MS4A6AQ9H2W1 248 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 U3KQK5 164 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 PDZD2O15018 2839 aa11.78□□□□□ -0.52
CLN3-251ENST00000636853 OR4C46A6NHA9 309 aa11.77□□□□□ -0.52
CLN3-251ENST00000636853 DEFB136Q30KP8 78 aa11.77□□□□□ -0.52
CLN3-251ENST00000636853 PET117Q6UWS5 81 aa11.77□□□□□ -0.52
CLN3-251ENST00000636853 OR10AG1Q8NH19 301 aa11.77□□□□□ -0.52
CLN3-251ENST00000636853 TMEM191AQ9H0A3 160 aa11.77□□□□□ -0.52
CLN3-251ENST00000636853 FLNAP21333 2647 aaKnown RBP11.77□□□□□ -0.52
CLN3-251ENST00000636853 SYS1-DBNDD2H3BUS1 97 aa11.77□□□□□ -0.53
CLN3-251ENST00000636853 TAX1BP3O14907 124 aa11.77□□□□□ -0.53
CLN3-251ENST00000636853 NCR2O95944 276 aa11.77□□□□□ -0.53
CLN3-251ENST00000636853 VAMP3Q15836 100 aa11.77□□□□□ -0.53
CLN3-251ENST00000636853 HIST2H2BDQ6DRA6 164 aa11.77□□□□□ -0.53
CLN3-251ENST00000636853 PRSS3P2Q8NHM4 247 aa11.77□□□□□ -0.53
CLN3-251ENST00000636853 TIMM8BQ9Y5J9 83 aaPredicted RBP11.77□□□□□ -0.53
CLN3-251ENST00000636853 CKS2P33552 79 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 RNASE4P34096 147 aaKnown RBP11.76□□□□□ -0.53
CLN3-251ENST00000636853 IFI27P40305 119 aaPredicted RBP11.76□□□□□ -0.53
CLN3-251ENST00000636853 ID1P41134 155 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 BVES-AS1Q5T3Y7 98 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 SLC25A34Q6PIV7 304 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 SMIM15Q7Z3B0 74 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 RNF185Q96GF1 192 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 FAM19A4Q96LR4 140 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 HELZ2Q9BYK8 2649 aaKnown RBP11.76□□□□□ -0.53
CLN3-251ENST00000636853 Q6ZVH6 145 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 WFDC12Q8WWY7 111 aa11.76□□□□□ -0.53
CLN3-251ENST00000636853 H3BVH4 76 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 CD5LO43866 347 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 LEPROTL1O95214 131 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 ZNF688P0C7X2 276 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 FA2HQ7L5A8 372 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 SPATA12Q7Z6I5 190 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 AP5S1Q9NUS5 200 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 SIGLEC8Q9NYZ4 499 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 CUBNO60494 3623 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 TRAV21A0A0B4J279 112 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 HSBP1L1C9JCN9 74 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 LGALS9O00182 355 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 GAS8-AS1O95177 125 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 NPYP01303 97 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 SLURP1P55000 103 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 PMCHL2Q9BQD1 86 aa11.75□□□□□ -0.53
CLN3-251ENST00000636853 SPRY2O43597 315 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 MPV17L2Q567V2 206 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 DNAJC9-AS1A6NH13 148 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 EVI2AP22794 236 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 TCTEX1D4Q5JR98 221 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 PSMG4Q5JS54 123 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 KHDC1LQ5JSQ8 128 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 DUX3Q96PT4 197 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 CST9LQ9H4G1 147 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 SCRT2Q9NQ03 307 aa11.74□□□□□ -0.53
CLN3-251ENST00000636853 MYO9AB2RTY4 2548 aa11.73□□□□□ -0.53
CLN3-251ENST00000636853 KRTAP1-1Q07627 177 aa11.73□□□□□ -0.53
CLN3-251ENST00000636853 ANXA2RQ3ZCQ2 193 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms