RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 IAH1Q2TAA2 248 aaPredicted RBP9.42□□□□□ -0.9
CLN3-249ENST00000636685 ALKAL2Q6UX46 152 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 BPIFA4PQ86YQ2 179 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 Q8N976 141 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 AQP10Q96PS8 301 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 ZNF471Q9BX82 626 aaPredicted RBP9.42□□□□□ -0.9
CLN3-249ENST00000636685 GSKIPQ9P0R6 139 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 NMBP08949 121 aa9.41□□□□□ -0.9
CLN3-249ENST00000636685 TPT1P13693 172 aaKnown RBP9.41□□□□□ -0.9
CLN3-249ENST00000636685 STOML3Q8TAV4 291 aa9.41□□□□□ -0.9
CLN3-249ENST00000636685 CIB3Q96Q77 187 aaPredicted RBP9.41□□□□□ -0.9
CLN3-249ENST00000636685 PAXXQ9BUH6 204 aa9.41□□□□□ -0.9
CLN3-249ENST00000636685 AGPAT4-IT1Q9H0P7 198 aa9.41□□□□□ -0.9
CLN3-249ENST00000636685 RNF24Q9Y225 148 aa9.41□□□□□ -0.9
CLN3-249ENST00000636685 TRAV8-3A0A0A6YYJ7 113 aa9.4□□□□□ -0.9
CLN3-249ENST00000636685 DUXBA0A1W2PPF3 345 aa9.4□□□□□ -0.9
CLN3-249ENST00000636685 H0YIZ8 118 aa9.4□□□□□ -0.9
CLN3-249ENST00000636685 M0R3E3 92 aa9.4□□□□□ -0.9
CLN3-249ENST00000636685 MED6O75586 246 aa9.4□□□□□ -0.9
CLN3-249ENST00000636685 RAB32Q13637 225 aa9.4□□□□□ -0.9
CLN3-249ENST00000636685 EIF5AL1Q6IS14 154 aaKnown RBP9.4□□□□□ -0.9
CLN3-249ENST00000636685 RASL10AQ92737 203 aa9.4□□□□□ -0.9
CLN3-249ENST00000636685 IGHV3-16A0A0C4DH30 117 aa9.39□□□□□ -0.91
CLN3-249ENST00000636685 SYNGR2O43760 224 aa9.39□□□□□ -0.91
CLN3-249ENST00000636685 CRISP2P16562 243 aa9.39□□□□□ -0.91
CLN3-249ENST00000636685 LELP1Q5T871 98 aa9.39□□□□□ -0.91
CLN3-249ENST00000636685 ZFAND2AQ8N6M9 145 aa9.39□□□□□ -0.91
CLN3-249ENST00000636685 ATP6V0E2Q8NHE4 81 aa9.39□□□□□ -0.91
CLN3-249ENST00000636685 RPH3ALQ9UNE2 315 aa9.39□□□□□ -0.91
CLN3-249ENST00000636685 TRAV4A0A0B4J268 109 aa9.38□□□□□ -0.91
CLN3-249ENST00000636685 KRBOX1C9JBD0 128 aa9.38□□□□□ -0.91
CLN3-249ENST00000636685 S100A10P60903 97 aa9.38□□□□□ -0.91
CLN3-249ENST00000636685 SLC38A11Q08AI6 406 aa9.38□□□□□ -0.91
CLN3-249ENST00000636685 DAZ4Q86SG3 579 aaKnown RBP9.38□□□□□ -0.91
CLN3-249ENST00000636685 OR4C5Q8NGB2 326 aa9.38□□□□□ -0.91
CLN3-249ENST00000636685 LINC00477Q96M19 166 aa9.38□□□□□ -0.91
CLN3-249ENST00000636685 DAZ3Q9NR90 486 aaKnown RBP9.38□□□□□ -0.91
CLN3-249ENST00000636685 OR5AC2Q9NZP5 309 aa9.38□□□□□ -0.91
CLN3-249ENST00000636685 STRAPQ9Y3F4 350 aaKnown RBP9.38□□□□□ -0.91
CLN3-249ENST00000636685 PFN1P07737 140 aaKnown RBP9.37□□□□□ -0.91
CLN3-249ENST00000636685 RPL12P30050 165 aaKnown RBP9.37□□□□□ -0.91
CLN3-249ENST00000636685 MUC21Q5SSG8 566 aa9.37□□□□□ -0.91
CLN3-249ENST00000636685 DNAJC30Q96LL9 226 aa9.37□□□□□ -0.91
CLN3-249ENST00000636685 CYTL1Q9NRR1 136 aa9.37□□□□□ -0.91
CLN3-249ENST00000636685 MUC2Q02817 5179 aa9.36□□□□□ -0.91
CLN3-249ENST00000636685 K7EPK0 472 aa9.36□□□□□ -0.91
CLN3-249ENST00000636685 COX7A2P2O60397 106 aa9.36□□□□□ -0.91
CLN3-249ENST00000636685 GATA1P15976 413 aaPredicted RBP9.36□□□□□ -0.91
CLN3-249ENST00000636685 TOR2AQ5JU69 321 aa9.36□□□□□ -0.91
CLN3-249ENST00000636685 PXDC1Q5TGL8 231 aa9.36□□□□□ -0.91
CLN3-249ENST00000636685 RAB19A4D1S5 217 aa9.35□□□□□ -0.91
CLN3-249ENST00000636685 MBPP02686 304 aaPredicted RBP9.35□□□□□ -0.91
CLN3-249ENST00000636685 PVALBP20472 110 aaPredicted RBP9.35□□□□□ -0.91
CLN3-249ENST00000636685 GUK1Q16774 197 aa9.35□□□□□ -0.91
CLN3-249ENST00000636685 MRPL53Q96EL3 112 aaKnown RBP9.35□□□□□ -0.91
CLN3-249ENST00000636685 SPXQ9BT56 116 aa9.35□□□□□ -0.91
CLN3-249ENST00000636685 DPH3P1Q9H4G8 78 aa9.35□□□□□ -0.91
CLN3-249ENST00000636685 LSM5Q9Y4Y9 91 aaKnown RBP9.35□□□□□ -0.91
CLN3-249ENST00000636685 COX11Q9Y6N1 276 aa9.35□□□□□ -0.91
CLN3-249ENST00000636685 BORCS7-ASMTA0A0B4J1R7 106 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 TEX46H3BTG2 121 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 SLC25A6P12236 298 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 BLOC1S1P78537 153 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 TMEM183BQ1AE95 376 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 C10orf113Q5VZT2 155 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 UQCC3Q6UW78 93 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 TMEM183AQ8IXX5 376 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 NPVFQ9HCQ7 196 aa9.34□□□□□ -0.91
CLN3-249ENST00000636685 IGKV2D-24A0A075B6R9 120 aa9.33□□□□□ -0.92
CLN3-249ENST00000636685 IGKV2-40A0A087WW87 121 aaPredicted RBP9.33□□□□□ -0.92
CLN3-249ENST00000636685 GGTLC3B5MD39 225 aa9.33□□□□□ -0.92
CLN3-249ENST00000636685 AGPAT2O15120 278 aa9.33□□□□□ -0.92
CLN3-249ENST00000636685 SCGB1D2O95969 90 aa9.33□□□□□ -0.92
CLN3-249ENST00000636685 IGKV2D-40P01614 121 aaPredicted RBP9.33□□□□□ -0.92
CLN3-249ENST00000636685 SLC25A29Q8N8R3 303 aa9.33□□□□□ -0.92
CLN3-249ENST00000636685 GTSF1LQ9H1H1 148 aa9.33□□□□□ -0.92
CLN3-249ENST00000636685 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.33□□□□□ -0.92
CLN3-249ENST00000636685 PANO1I0J062 215 aa9.32□□□□□ -0.92
CLN3-249ENST00000636685 ZNF253O75346 499 aa9.32□□□□□ -0.92
CLN3-249ENST00000636685 TMEM78Q5T7P6 136 aa9.32□□□□□ -0.92
CLN3-249ENST00000636685 RMI2Q96E14 147 aa9.32□□□□□ -0.92
CLN3-249ENST00000636685 LINC01600Q96MT4 127 aa9.32□□□□□ -0.92
CLN3-249ENST00000636685 PSENENQ9NZ42 101 aa9.32□□□□□ -0.92
CLN3-249ENST00000636685 TRBV19A0A075B6N1 114 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 TRAV8-1A0A0A6YYK1 113 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 NDUFB4O95168 129 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 VAMP2P63027 116 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 ID3Q02535 119 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 VWC2Q2TAL6 325 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 FAM74A1Q5RGS3 127 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 RPL7L1Q6DKI1 246 aaKnown RBP9.31□□□□□ -0.92
CLN3-249ENST00000636685 FAM122CQ6P4D5 195 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 EXOC3-AS1Q8N2X6 119 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 ZNF492Q9P255 531 aa9.31□□□□□ -0.92
CLN3-249ENST00000636685 SEC11BP0C7V7 166 aa9.3□□□□□ -0.92
CLN3-249ENST00000636685 METTL15P1P0C7V9 234 aa9.3□□□□□ -0.92
CLN3-249ENST00000636685 SULT1A2P50226 295 aa9.3□□□□□ -0.92
CLN3-249ENST00000636685 POLR2GP62487 172 aaKnown RBP eCLIP9.3□□□□□ -0.92
CLN3-249ENST00000636685 Q8TAT8 98 aa9.3□□□□□ -0.92
CLN3-249ENST00000636685 TMED6Q8WW62 240 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms