RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PDE6DO43924 150 aa12.88□□□□□ -0.35
CLN3-243ENST00000635973 PFN1P07737 140 aaKnown RBP12.88□□□□□ -0.35
CLN3-243ENST00000635973 HTN3P15516 51 aa12.88□□□□□ -0.35
CLN3-243ENST00000635973 ZNF80P51504 273 aaPredicted RBP12.88□□□□□ -0.35
CLN3-243ENST00000635973 IBA57Q5T440 356 aaKnown RBP12.88□□□□□ -0.35
CLN3-243ENST00000635973 TMEM183AQ8IXX5 376 aa12.88□□□□□ -0.35
CLN3-243ENST00000635973 SDF2L1Q9HCN8 221 aa12.88□□□□□ -0.35
CLN3-243ENST00000635973 VAX2Q9UIW0 290 aa12.88□□□□□ -0.35
CLN3-243ENST00000635973 APLNQ9ULZ1 77 aa12.88□□□□□ -0.35
CLN3-243ENST00000635973 DEFB131BA0A096LNP1 70 aa12.87□□□□□ -0.35
CLN3-243ENST00000635973 TRBV6-1A0A0K0K1D8 114 aa12.87□□□□□ -0.35
CLN3-243ENST00000635973 LTAP01374 205 aa12.87□□□□□ -0.35
CLN3-243ENST00000635973 TCL1AP56279 114 aa12.87□□□□□ -0.35
CLN3-243ENST00000635973 TEX261Q6UWH6 196 aa12.87□□□□□ -0.35
CLN3-243ENST00000635973 C11orf72Q8NBR9 251 aa12.87□□□□□ -0.35
CLN3-243ENST00000635973 KCNS1Q96KK3 526 aa12.87□□□□□ -0.35
CLN3-243ENST00000635973 IGHV4-4A0A075B6R2 117 aa12.86□□□□□ -0.35
CLN3-243ENST00000635973 NHLRC2Q8NBF2 726 aa12.86□□□□□ -0.35
CLN3-243ENST00000635973 C11orf52Q96A22 123 aa12.86□□□□□ -0.35
CLN3-243ENST00000635973 ZC2HC1AQ96GY0 325 aa12.86□□□□□ -0.35
CLN3-243ENST00000635973 KRTAP17-1Q9BYP8 105 aa12.86□□□□□ -0.35
CLN3-243ENST00000635973 GAGE12BA1L429 117 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 GAGE7O76087 117 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 GAGE12FP0CL80 117 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 GAGE12GP0CL81 117 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 GAGE12IP0CL82 117 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 RPL35P42766 123 aaKnown RBP12.85□□□□□ -0.35
CLN3-243ENST00000635973 DAZ2Q13117 558 aaKnown RBP12.85□□□□□ -0.35
CLN3-243ENST00000635973 TDRG1Q3Y452 100 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 BAGE2Q86Y30 109 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 MED9Q9NWA0 146 aa12.85□□□□□ -0.35
CLN3-243ENST00000635973 KMT2AQ03164 3969 aa12.84□□□□□ -0.35
CLN3-243ENST00000635973 TRGV1A0A0A0MS02 117 aa12.84□□□□□ -0.35
CLN3-243ENST00000635973 FABP5P3A8MUU1 101 aa12.84□□□□□ -0.35
CLN3-243ENST00000635973 TYMSP04818 313 aa12.84□□□□□ -0.35
CLN3-243ENST00000635973 FAM162BQ5T6X4 162 aa12.84□□□□□ -0.35
CLN3-243ENST00000635973 LYPD6BQ8NI32 183 aa12.84□□□□□ -0.35
CLN3-243ENST00000635973 MDFICQ9P1T7 246 aa12.84□□□□□ -0.35
CLN3-243ENST00000635973 RBFOX3A6NFN3 312 aa12.83□□□□□ -0.36
CLN3-243ENST00000635973 GNRH2O43555 120 aa12.83□□□□□ -0.36
CLN3-243ENST00000635973 Q6ZTI0 123 aa12.83□□□□□ -0.36
CLN3-243ENST00000635973 PCNPQ8WW12 178 aaKnown RBP12.83□□□□□ -0.36
CLN3-243ENST00000635973 DERL1Q9BUN8 251 aa12.83□□□□□ -0.36
CLN3-243ENST00000635973 TRGV2A0A075B6R0 118 aa12.82□□□□□ -0.36
CLN3-243ENST00000635973 SH2D1AO60880 128 aa12.82□□□□□ -0.36
CLN3-243ENST00000635973 ORM1P02763 201 aa12.82□□□□□ -0.36
CLN3-243ENST00000635973 TOR2AQ5JU69 321 aa12.82□□□□□ -0.36
CLN3-243ENST00000635973 COX8CQ7Z4L0 72 aa12.82□□□□□ -0.36
CLN3-243ENST00000635973 NDUFAF3Q9BU61 184 aa12.82□□□□□ -0.36
CLN3-243ENST00000635973 EIF5A2Q9GZV4 153 aaKnown RBP12.82□□□□□ -0.36
CLN3-243ENST00000635973 C11orf21Q9P2W6 132 aa12.82□□□□□ -0.36
CLN3-243ENST00000635973 IGHV3-16A0A0C4DH30 117 aa12.81□□□□□ -0.36
CLN3-243ENST00000635973 ATP5G1P05496 136 aa12.81□□□□□ -0.36
CLN3-243ENST00000635973 GNG4P50150 75 aa12.81□□□□□ -0.36
CLN3-243ENST00000635973 CENPWQ5EE01 88 aa12.81□□□□□ -0.36
CLN3-243ENST00000635973 ZNF506Q5JVG8 444 aa12.81□□□□□ -0.36
CLN3-243ENST00000635973 MRPL16Q9NX20 251 aaKnown RBP12.81□□□□□ -0.36
CLN3-243ENST00000635973 DNAH10Q8IVF4 4471 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 F5H768 121 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 M0R036 132 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 SPINK4O60575 86 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 CRIP1P50238 77 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 PRR27Q6MZM9 219 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 LINC00612Q8N6U2 182 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 SPXQ9BT56 116 aa12.8□□□□□ -0.36
CLN3-243ENST00000635973 HERC2O95714 4834 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 B4DEV8 164 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 P0DMU3 169 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 FAM231AP0DMU4 169 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 FAM231CP0DMU5 169 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 MGST1P10620 155 aaKnown RBP12.79□□□□□ -0.36
CLN3-243ENST00000635973 S100A4P26447 101 aaKnown RBP12.79□□□□□ -0.36
CLN3-243ENST00000635973 CEBPGP53567 150 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 ZNF674Q2M3X9 581 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 LGALS9BQ3B8N2 356 aa12.79□□□□□ -0.36
CLN3-243ENST00000635973 IGKV3D-20A0A0C4DH25 116 aa12.78□□□□□ -0.36
CLN3-243ENST00000635973 RAB19A4D1S5 217 aa12.78□□□□□ -0.36
CLN3-243ENST00000635973 ASIPP42127 132 aa12.78□□□□□ -0.36
CLN3-243ENST00000635973 OR5I1Q13606 314 aa12.78□□□□□ -0.36
CLN3-243ENST00000635973 FAM210AQ96ND0 272 aa12.78□□□□□ -0.36
CLN3-243ENST00000635973 MLST8Q9BVC4 326 aa12.78□□□□□ -0.36
CLN3-243ENST00000635973 TMSB15BA0A087X1C1 80 aa12.77□□□□□ -0.37
CLN3-243ENST00000635973 TMEM250H0YL14 139 aa12.77□□□□□ -0.37
CLN3-243ENST00000635973 M0R2P5 195 aa12.77□□□□□ -0.37
CLN3-243ENST00000635973 KRBOX1C9JBD0 128 aa12.76□□□□□ -0.37
CLN3-243ENST00000635973 RAB14P61106 215 aa12.76□□□□□ -0.37
CLN3-243ENST00000635973 SMIM12Q96EX1 92 aa12.76□□□□□ -0.37
CLN3-243ENST00000635973 FAM210BQ96KR6 192 aa12.76□□□□□ -0.37
CLN3-243ENST00000635973 LINC01559Q495D7 138 aa12.75□□□□□ -0.37
CLN3-243ENST00000635973 TMEM88Q6PEY1 159 aa12.75□□□□□ -0.37
CLN3-243ENST00000635973 UBE2DNLQ8IWF7 75 aa12.75□□□□□ -0.37
CLN3-243ENST00000635973 POM121L12Q8N7R1 296 aa12.75□□□□□ -0.37
CLN3-243ENST00000635973 DAZAP1Q96EP5 407 aaKnown RBP12.75□□□□□ -0.37
CLN3-243ENST00000635973 PARLQ9H300 379 aa12.75□□□□□ -0.37
CLN3-243ENST00000635973 GRIFINA4D1Z8 144 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 PGPEP1LA6NFU8 196 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 C9JCJ5 164 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 H3BVH4 76 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 IGHV3-53P01767 116 aa12.74□□□□□ -0.37
CLN3-243ENST00000635973 RNASE3P12724 160 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms