RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 PRR27Q6MZM9 219 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 GATD1Q8NB37 220 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 BLNKQ8WV28 456 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 TMEM191AQ9H0A3 160 aa10.68□□□□□ -0.7
CLN3-242ENST00000635958 ZNF785A8K8V0 405 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 K7EQM0 130 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 PET117Q6UWS5 81 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 ZNF738Q8NE65 137 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 SPATA3Q8NHX4 192 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 MS4A6AQ9H2W1 248 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 Q9H3A6 140 aa10.67□□□□□ -0.7
CLN3-242ENST00000635958 M0QZ24 198 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 CAMPP49913 170 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 RIGQ13278 110 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 EBLN2Q6P2I7 272 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 TCF24Q7RTU0 167 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 ARL6IP6Q8N6S5 226 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 LINC00482Q8N8I6 264 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 HSPB8Q9UJY1 196 aa10.66□□□□□ -0.7
CLN3-242ENST00000635958 HSBP1L1C9JCN9 74 aa10.65□□□□□ -0.7
CLN3-242ENST00000635958 H3BTX0 84 aa10.65□□□□□ -0.7
CLN3-242ENST00000635958 PSG9Q00887 426 aa10.65□□□□□ -0.7
CLN3-242ENST00000635958 PMCHL2Q9BQD1 86 aa10.65□□□□□ -0.7
CLN3-242ENST00000635958 SERTM2A0A1B0GWG4 89 aa10.65□□□□□ -0.71
CLN3-242ENST00000635958 FBLL1A6NHQ2 334 aaKnown RBP10.65□□□□□ -0.71
CLN3-242ENST00000635958 NPSP0C0P6 89 aa10.65□□□□□ -0.71
CLN3-242ENST00000635958 GNG5P63218 68 aa10.65□□□□□ -0.71
CLN3-242ENST00000635958 SHISA2Q6UWI4 295 aa10.65□□□□□ -0.71
CLN3-242ENST00000635958 C12orf54Q6X4T0 127 aa10.65□□□□□ -0.71
CLN3-242ENST00000635958 C3orf56Q8N813 242 aa10.65□□□□□ -0.71
CLN3-242ENST00000635958 FBN3Q75N90 2809 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 LOC102724200A0A096LPH7 203 aaPredicted RBP10.64□□□□□ -0.71
CLN3-242ENST00000635958 LEPROTL1O95214 131 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 PF4P02776 101 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 RPS20P60866 119 aaKnown RBP10.64□□□□□ -0.71
CLN3-242ENST00000635958 DEFB114Q30KQ6 69 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 STPG4Q8N801 248 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 TMEM75Q8N9X5 138 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 SLC50A1Q9BRV3 221 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 MAP1LC3CQ9BXW4 147 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 VWFP04275 2813 aa10.64□□□□□ -0.71
CLN3-242ENST00000635958 SYS1-DBNDD2H3BUS1 97 aa10.63□□□□□ -0.71
CLN3-242ENST00000635958 SOCS3O14543 225 aa10.63□□□□□ -0.71
CLN3-242ENST00000635958 Q86TA4 180 aa10.63□□□□□ -0.71
CLN3-242ENST00000635958 CLEC5AQ9NY25 188 aa10.63□□□□□ -0.71
CLN3-242ENST00000635958 COX11Q9Y6N1 276 aa10.63□□□□□ -0.71
CLN3-242ENST00000635958 SAMD13Q5VXD3 122 aa10.63□□□□□ -0.71
CLN3-242ENST00000635958 ANK2Q01484 3957 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 TRAV8-2A0A0B4J237 113 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 OR4C46A6NHA9 309 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 IGLL1P15814 213 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 RPL11P62913 178 aaKnown RBP10.62□□□□□ -0.71
CLN3-242ENST00000635958 UBE2V1Q13404 147 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 EXOC3-AS1Q8N2X6 119 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 DCANP1Q8TF63 244 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 GTSF1Q8WW33 167 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 PGLYRP4Q96LB8 373 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 AAMDCQ9H7C9 122 aa10.62□□□□□ -0.71
CLN3-242ENST00000635958 TRAV2A0A0B4J234 112 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 TRAV25A0A0B4J276 109 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 A0A1B0GUT8 65 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 SPATA12Q7Z6I5 190 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 WFDC9Q8NEX5 89 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 DYNLRB2Q8TF09 96 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 SSBP4Q9BWG4 385 aaPredicted RBP10.61□□□□□ -0.71
CLN3-242ENST00000635958 IGHV1-24A0A0C4DH33 117 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 PTTG1IPP53801 180 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 LCN12Q6JVE5 192 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 MRPL53Q96EL3 112 aaKnown RBP10.61□□□□□ -0.71
CLN3-242ENST00000635958 URB1-AS1Q96HZ7 61 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 C16orf92Q96LL3 132 aa10.61□□□□□ -0.71
CLN3-242ENST00000635958 K7EQG2 157 aa10.6□□□□□ -0.71
CLN3-242ENST00000635958 TFPI2P48307 235 aa10.6□□□□□ -0.71
CLN3-242ENST00000635958 CD300EQ496F6 205 aaPredicted RBP10.6□□□□□ -0.71
CLN3-242ENST00000635958 PSMG4Q5JS54 123 aa10.6□□□□□ -0.71
CLN3-242ENST00000635958 SLC25A34Q6PIV7 304 aa10.6□□□□□ -0.71
CLN3-242ENST00000635958 TMEM61Q8N0U2 210 aa10.6□□□□□ -0.71
CLN3-242ENST00000635958 RPH3ALQ9UNE2 315 aa10.6□□□□□ -0.71
CLN3-242ENST00000635958 SELENOKQ9Y6D0 94 aa10.6□□□□□ -0.71
CLN3-242ENST00000635958 IGLV1-51P01701 117 aa10.59□□□□□ -0.71
CLN3-242ENST00000635958 CSN1S1P47710 185 aa10.59□□□□□ -0.71
CLN3-242ENST00000635958 PSG3Q16557 428 aa10.59□□□□□ -0.71
CLN3-242ENST00000635958 LINC00322Q6ZN03 302 aaPredicted RBP10.59□□□□□ -0.71
CLN3-242ENST00000635958 OR2K2Q8NGT1 345 aa10.59□□□□□ -0.71
CLN3-242ENST00000635958 IGKV3-7A0A075B6H7 116 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 K7EP13 123 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 M0R3E3 92 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 HLA-DMBP28068 263 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 HINT1P49773 126 aaPredicted RBP10.58□□□□□ -0.72
CLN3-242ENST00000635958 IGFL4Q6B9Z1 124 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 NOTCH3Q9UM47 2321 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 SAP30O75446 220 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 IGLV2-11P01706 119 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 ID1P41134 155 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 INSL3P51460 131 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 ZNF493Q6ZR52 646 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 PRNTQ86SH4 94 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 ATOH7Q8N100 152 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 SPAG8Q99932 426 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms