RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 A0A1W2PRE2 83 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 TYMSP04818 313 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 SUMO1P63165 101 aaKnown RBP10.24□□□□□ -0.77
LINC00643-206ENST00000623985 ZNF345Q14585 488 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 ZFP69Q49AA0 526 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 C6orf223Q8N319 242 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 SGK494Q96LW2 274 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 EPDR1Q9UM22 224 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 HERC2O95714 4834 aa10.24□□□□□ -0.77
LINC00643-206ENST00000623985 IGHV3-16A0A0C4DH30 117 aa10.23□□□□□ -0.77
LINC00643-206ENST00000623985 IGLV2-11P01706 119 aa10.23□□□□□ -0.77
LINC00643-206ENST00000623985 CRYBA4P53673 196 aa10.23□□□□□ -0.77
LINC00643-206ENST00000623985 FLI1Q01543 452 aaPredicted RBP10.23□□□□□ -0.77
LINC00643-206ENST00000623985 FHL2Q14192 279 aa10.23□□□□□ -0.77
LINC00643-206ENST00000623985 C8orf49Q96NF6 230 aa10.23□□□□□ -0.77
LINC00643-206ENST00000623985 PSG8Q9UQ74 426 aa10.23□□□□□ -0.77
LINC00643-206ENST00000623985 KIAA1109Q2LD37 5005 aa10.23□□□□□ -0.77
LINC00643-206ENST00000623985 TRAV4A0A0B4J268 109 aa10.22□□□□□ -0.77
LINC00643-206ENST00000623985 TRGV4A0A0C4DH28 118 aa10.22□□□□□ -0.77
LINC00643-206ENST00000623985 A0A1W2PPQ1 181 aa10.22□□□□□ -0.77
LINC00643-206ENST00000623985 M0R2P5 195 aa10.22□□□□□ -0.77
LINC00643-206ENST00000623985 GCGP01275 180 aa10.22□□□□□ -0.77
LINC00643-206ENST00000623985 PFN1P07737 140 aaKnown RBP10.22□□□□□ -0.77
LINC00643-206ENST00000623985 CYTL1Q9NRR1 136 aa10.22□□□□□ -0.77
LINC00643-206ENST00000623985 HHLA3Q9XRX5 114 aa10.22□□□□□ -0.77
LINC00643-206ENST00000623985 DYNC1H1Q14204 4646 aaKnown RBP10.21□□□□□ -0.77
LINC00643-206ENST00000623985 SMLR1H3BR10 107 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 GNRH2O43555 120 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 SFTA3P0C7M3 94 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 SMUG1Q53HV7 270 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 PRNTQ86SH4 94 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 ZNF479Q96JC4 524 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 KRTAP3-3Q9BYR6 98 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 KRTAP3-2Q9BYR7 98 aa10.21□□□□□ -0.77
LINC00643-206ENST00000623985 NKX6-2Q9C056 277 aaPredicted RBP10.21□□□□□ -0.77
LINC00643-206ENST00000623985 DNAH11Q96DT5 4516 aa10.21□□□□□ -0.78
LINC00643-206ENST00000623985 MAP1LC3B2A6NCE7 125 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 FAM74A7A6NL05 159 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 PPT1P50897 306 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 ZNF80P51504 273 aaPredicted RBP10.2□□□□□ -0.78
LINC00643-206ENST00000623985 FGF8P55075 233 aaPredicted RBP10.2□□□□□ -0.78
LINC00643-206ENST00000623985 UBE2G2P60604 165 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 MRPL23Q16540 153 aaKnown RBP10.2□□□□□ -0.78
LINC00643-206ENST00000623985 SAPCD1Q5SSQ6 148 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 KCNRGQ8N5I3 272 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 KRTAP1-5Q9BYS1 174 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 MAP1LC3BQ9GZQ8 125 aa10.2□□□□□ -0.78
LINC00643-206ENST00000623985 PEX7O00628 323 aa10.19□□□□□ -0.78
LINC00643-206ENST00000623985 IFNA7P01567 189 aa10.19□□□□□ -0.78
LINC00643-206ENST00000623985 BTF3P20290 206 aaKnown RBP10.19□□□□□ -0.78
LINC00643-206ENST00000623985 Q86TA4 180 aa10.19□□□□□ -0.78
LINC00643-206ENST00000623985 OR4C5Q8NGB2 326 aa10.19□□□□□ -0.78
LINC00643-206ENST00000623985 PCNPQ8WW12 178 aaKnown RBP10.19□□□□□ -0.78
LINC00643-206ENST00000623985 HMSDA8MTL9 139 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 C9JCJ5 164 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 ORM1P02763 201 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 TNP2Q05952 138 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 NEGR1Q7Z3B1 354 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 HIST1H2BAQ96A08 127 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 C11orf21Q9P2W6 132 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 ARL2-SNX15V9GYD0 113 aa10.18□□□□□ -0.78
LINC00643-206ENST00000623985 TRAV34A0A0B4J273 112 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 K7EQD1 137 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 SIVA1O15304 175 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 NXPH4O95158 308 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 SRIP30626 198 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 OR11H4Q8NGC9 324 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 STOML3Q8TAV4 291 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 LINC00479Q96M42 142 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 C9orf85Q96MD7 179 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 TCEAL7Q9BRU2 100 aa10.17□□□□□ -0.78
LINC00643-206ENST00000623985 A0A0D9SG52 128 aa10.16□□□□□ -0.78
LINC00643-206ENST00000623985 KANTRA0A1W2PQU2 76 aa10.16□□□□□ -0.78
LINC00643-206ENST00000623985 BCL2L11O43521 198 aa10.16□□□□□ -0.78
LINC00643-206ENST00000623985 SEC11BP0C7V7 166 aa10.16□□□□□ -0.78
LINC00643-206ENST00000623985 GYPEP15421 78 aa10.16□□□□□ -0.78
LINC00643-206ENST00000623985 ZNF876PQ49A33 203 aa10.16□□□□□ -0.78
LINC00643-206ENST00000623985 LYPD5Q6UWN5 251 aa10.16□□□□□ -0.78
LINC00643-206ENST00000623985 UMAD1C9J7I0 102 aa10.15□□□□□ -0.78
LINC00643-206ENST00000623985 CIDEAO60543 219 aa10.15□□□□□ -0.78
LINC00643-206ENST00000623985 MED14OSP0DP75 135 aa10.15□□□□□ -0.78
LINC00643-206ENST00000623985 GATA1P15976 413 aaPredicted RBP10.15□□□□□ -0.78
LINC00643-206ENST00000623985 FHITP49789 147 aa10.15□□□□□ -0.78
LINC00643-206ENST00000623985 PTH2Q96A98 100 aa10.15□□□□□ -0.78
LINC00643-206ENST00000623985 FMC1Q96HJ9 113 aa10.15□□□□□ -0.78
LINC00643-206ENST00000623985 TXNDC17Q9BRA2 123 aa10.15□□□□□ -0.78
LINC00643-206ENST00000623985 RNASE3P12724 160 aaKnown RBP10.14□□□□□ -0.79
LINC00643-206ENST00000623985 UBE2G1P62253 170 aa10.14□□□□□ -0.79
LINC00643-206ENST00000623985 SH2D6Q7Z4S9 175 aa10.14□□□□□ -0.79
LINC00643-206ENST00000623985 ZNF471Q9BX82 626 aaPredicted RBP10.14□□□□□ -0.79
LINC00643-206ENST00000623985 FABP5P3A8MUU1 101 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 RS1O15537 224 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 LINC00315P59091 139 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 EIF5AP63241 154 aaKnown RBP10.13□□□□□ -0.79
LINC00643-206ENST00000623985 ZNF506Q5JVG8 444 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 CFAP126Q5VTH2 177 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 CST9LP1Q5W188 147 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 DPPA3Q6W0C5 159 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 COX8CQ7Z4L0 72 aa10.13□□□□□ -0.79
LINC00643-206ENST00000623985 ZNF575Q86XF7 245 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms