RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PEF1Q9UBV8 284 aaKnown RBP16.18■□□□□ 0.18
LIME1-210ENST00000621325 HOXA3O43365 443 aaPredicted RBP16.17■□□□□ 0.18
LIME1-210ENST00000621325 ZNF138P52744 262 aa16.17■□□□□ 0.18
LIME1-210ENST00000621325 RPL11P62913 178 aaKnown RBP16.17■□□□□ 0.18
LIME1-210ENST00000621325 TMEM78Q5T7P6 136 aa16.17■□□□□ 0.18
LIME1-210ENST00000621325 Q6ZQT7 251 aa16.17■□□□□ 0.18
LIME1-210ENST00000621325 C9orf139Q6ZV77 190 aa16.17■□□□□ 0.18
LIME1-210ENST00000621325 GATD1Q8NB37 220 aa16.17■□□□□ 0.18
LIME1-210ENST00000621325 BORCS7Q96B45 105 aa16.17■□□□□ 0.18
LIME1-210ENST00000621325 RHPN1-AS1Q9BWJ2 59 aa16.17■□□□□ 0.18
LIME1-210ENST00000621325 CCDC168Q8NDH2 2452 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 SOCS3O14543 225 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 PMCHL1Q16048 86 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 C11orf21Q9P2W6 132 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 IGHV7-4-1A0A0J9YVY3 117 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 GAGE10A6NGK3 116 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 IGLC6P0CF74 106 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 C9orf47Q6ZRZ4 202 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 DUX5Q96PT3 197 aa16.16■□□□□ 0.18
LIME1-210ENST00000621325 DAZ1Q9NQZ3 744 aaKnown RBP16.15■□□□□ 0.18
LIME1-210ENST00000621325 ITPR3Q14573 2671 aa16.15■□□□□ 0.18
LIME1-210ENST00000621325 A0A1B0GW15 77 aa16.15■□□□□ 0.18
LIME1-210ENST00000621325 M0R2Z0 102 aa16.14■□□□□ 0.17
LIME1-210ENST00000621325 SRD5A1P18405 259 aa16.14■□□□□ 0.17
LIME1-210ENST00000621325 ZNF702PQ9H963 129 aa16.14■□□□□ 0.17
LIME1-210ENST00000621325 ZNF493Q6ZR52 646 aa16.14■□□□□ 0.17
LIME1-210ENST00000621325 IGKV3D-20A0A0C4DH25 116 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 UFSP1Q6NVU6 142 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 AMN1Q8IY45 258 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 CSN3P07498 182 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 SCGB1A1P11684 91 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 FOXE3Q13461 319 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 LINC01559Q495D7 138 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 WFDC11Q8NEX6 87 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 MSRB1Q9NZV6 116 aa16.13■□□□□ 0.17
LIME1-210ENST00000621325 SONP18583 2426 aaKnown RBP16.12■□□□□ 0.17
LIME1-210ENST00000621325 PRR9Q5T870 116 aa16.12■□□□□ 0.17
LIME1-210ENST00000621325 SPATA12Q7Z6I5 190 aa16.12■□□□□ 0.17
LIME1-210ENST00000621325 CD5LO43866 347 aa16.11■□□□□ 0.17
LIME1-210ENST00000621325 SRSF2Q01130 221 aaKnown RBP16.11■□□□□ 0.17
LIME1-210ENST00000621325 TWIST1Q15672 202 aa16.11■□□□□ 0.17
LIME1-210ENST00000621325 NEGR1Q7Z3B1 354 aa16.11■□□□□ 0.17
LIME1-210ENST00000621325 FAM181BA6NEQ2 426 aa16.11■□□□□ 0.17
LIME1-210ENST00000621325 EBLN2Q6P2I7 272 aa16.11■□□□□ 0.17
LIME1-210ENST00000621325 F6UB75 175 aa16.1■□□□□ 0.17
LIME1-210ENST00000621325 J3KRW8 73 aa16.1■□□□□ 0.17
LIME1-210ENST00000621325 CKS1BP61024 79 aa16.1■□□□□ 0.17
LIME1-210ENST00000621325 FAM106AQ4KMX7 169 aa16.1■□□□□ 0.17
LIME1-210ENST00000621325 FAM104BQ5XKR9 115 aa16.1■□□□□ 0.17
LIME1-210ENST00000621325 IGHV1-24A0A0C4DH33 117 aa16.09■□□□□ 0.17
LIME1-210ENST00000621325 D6R8Y8 96 aa16.09■□□□□ 0.17
LIME1-210ENST00000621325 SIGMAR1Q99720 223 aa16.09■□□□□ 0.17
LIME1-210ENST00000621325 KMT2BQ9UMN6 2715 aaPredicted RBP16.08■□□□□ 0.17
LIME1-210ENST00000621325 HIST1H1AQ02539 215 aaPredicted RBP16.08■□□□□ 0.17
LIME1-210ENST00000621325 CHCHD1Q96BP2 118 aaKnown RBP16.08■□□□□ 0.17
LIME1-210ENST00000621325 MYO9AB2RTY4 2548 aa16.08■□□□□ 0.16
LIME1-210ENST00000621325 TMEM89A2RUT3 159 aa16.08■□□□□ 0.16
LIME1-210ENST00000621325 C7orf71A4D174 169 aa16.08■□□□□ 0.16
LIME1-210ENST00000621325 K7EMT4 169 aa16.08■□□□□ 0.16
LIME1-210ENST00000621325 MRPL51Q4U2R6 128 aaKnown RBP16.07■□□□□ 0.16
LIME1-210ENST00000621325 C12orf54Q6X4T0 127 aa16.07■□□□□ 0.16
LIME1-210ENST00000621325 LINC00173Q6ZV60 143 aa16.07■□□□□ 0.16
LIME1-210ENST00000621325 HELZ2Q9BYK8 2649 aaKnown RBP16.07■□□□□ 0.16
LIME1-210ENST00000621325 C2orf70A6NJV1 201 aa16.07■□□□□ 0.16
LIME1-210ENST00000621325 JMJD8Q96S16 334 aa16.07■□□□□ 0.16
LIME1-210ENST00000621325 NAA38Q9BRA0 125 aaKnown RBP16.07■□□□□ 0.16
LIME1-210ENST00000621325 PLA2G2AP14555 144 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 OR10J6PQ8NGY7 276 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 FLNAP21333 2647 aaKnown RBP16.06■□□□□ 0.16
LIME1-210ENST00000621325 hDV102S1A0JD36 115 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 SMKR1H3BMG3 65 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 OVOL1O14753 267 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 WFDC3Q8IUB2 231 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 ZFAND2AQ8N6M9 145 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 CNFNQ9BYD5 112 aa16.06■□□□□ 0.16
LIME1-210ENST00000621325 U3KQK5 164 aa16.05■□□□□ 0.16
LIME1-210ENST00000621325 MYOZ3Q8TDC0 251 aa16.05■□□□□ 0.16
LIME1-210ENST00000621325 LINC00477Q96M19 166 aa16.05■□□□□ 0.16
LIME1-210ENST00000621325 UFC1Q9Y3C8 167 aa16.05■□□□□ 0.16
LIME1-210ENST00000621325 IGHV4OR15-8A0A075B7B6 117 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 A0A087WW49 117 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 KIR3DS1Q14943 382 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 SHISA2Q6UWI4 295 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 GTF2H5Q6ZYL4 71 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 OR8A1Q8NGG7 326 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 PRELID3AQ96N28 172 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 ELANEP08246 267 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 SYNJ2BPP57105 145 aa16.04■□□□□ 0.16
LIME1-210ENST00000621325 LOC389332A0A1B0GUA5 103 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 NCR2O95944 276 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 LGALS1P09382 135 aaKnown RBP16.03■□□□□ 0.16
LIME1-210ENST00000621325 SLC25A34Q6PIV7 304 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 OR10AG1Q8NH19 301 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 DCANP1Q8TF63 244 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 IFI27P40305 119 aaPredicted RBP16.03■□□□□ 0.16
LIME1-210ENST00000621325 C18orf65Q6ZTR6 163 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 ORMDL3Q8N138 153 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 TMEM191AQ9H0A3 160 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 LENEPQ9Y5L5 61 aa16.03■□□□□ 0.16
LIME1-210ENST00000621325 GAS8-AS1O95177 125 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms