RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 GFRA4Q9GZZ7 299 aa10.86□□□□□ -0.67
CIITA-213ENST00000618327 PATE2Q6UY27 113 aa10.86□□□□□ -0.67
CIITA-213ENST00000618327 PRR25Q96S07 402 aa10.86□□□□□ -0.67
CIITA-213ENST00000618327 PLEKHB2Q96CS7 222 aa10.86□□□□□ -0.67
CIITA-213ENST00000618327 TNRC6BQ9UPQ9 1833 aaKnown RBP10.86□□□□□ -0.67
CIITA-213ENST00000618327 TNFRSF6BO95407 300 aa10.85□□□□□ -0.67
CIITA-213ENST00000618327 HIST1H4AP62805 103 aaKnown RBP10.85□□□□□ -0.67
CIITA-213ENST00000618327 LRRC75A-AS1Q8N1F1 130 aa10.85□□□□□ -0.67
CIITA-213ENST00000618327 MRPL36Q9P0J6 103 aaKnown RBP10.85□□□□□ -0.67
CIITA-213ENST00000618327 A0A1B0GUS0 222 aa10.85□□□□□ -0.67
CIITA-213ENST00000618327 CT83Q5H943 113 aa10.85□□□□□ -0.67
CIITA-213ENST00000618327 CHAC1Q9BUX1 264 aa10.85□□□□□ -0.67
CIITA-213ENST00000618327 LGALS1P09382 135 aaKnown RBP10.84□□□□□ -0.67
CIITA-213ENST00000618327 NPSP0C0P6 89 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 DYNAPQ8N1N2 210 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 TMEM158Q8WZ71 300 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 RCHY1Q96PM5 261 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 RPL35AP18077 110 aaKnown RBP10.84□□□□□ -0.67
CIITA-213ENST00000618327 MORN5Q5VZ52 161 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 FAM231DQ6ZW35 169 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 FAM231BA6NCW3 169 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 LINC00158P58513 81 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 FOXE3Q13461 319 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 IGLC2P0DOY2 106 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 IGLC3P0DOY3 106 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 ZNF876PQ49A33 203 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 STPG4Q8N801 248 aa10.84□□□□□ -0.67
CIITA-213ENST00000618327 INSP01308 110 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 IGHG2P01859 326 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 ARMS2P0C7Q2 107 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 MALP21145 153 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 V9GYV3 84 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 PLXNB1O43157 2135 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 HOXD3P31249 432 aaPredicted RBP10.83□□□□□ -0.68
CIITA-213ENST00000618327 AMN1Q8IY45 258 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 TNFRSF13BO14836 293 aaPredicted RBP10.83□□□□□ -0.68
CIITA-213ENST00000618327 ZNF295-AS1Q8N0V1 137 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 C3orf56Q8N813 242 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 GATD1Q8NB37 220 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 UBE2E2Q96LR5 201 aa10.83□□□□□ -0.68
CIITA-213ENST00000618327 C9JAW5 83 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 NPC2P61916 151 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 CFHR4Q92496 578 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 ZFYVE26Q68DK2 2539 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 GP9P14770 177 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 ZNF415Q09FC8 603 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 C18orf32Q8TCD1 76 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 VGLL1Q99990 258 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 C1QTNF4Q9BXJ3 329 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 SPINK13Q1W4C9 94 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 DPH3P1Q9H4G8 78 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 HTN3P15516 51 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 ETDBQ3ZM63 59 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 ZNF48Q96MX3 618 aaPredicted RBP10.82□□□□□ -0.68
CIITA-213ENST00000618327 FANCD2OSQ96PS1 177 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 EDA2RQ9HAV5 297 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 MYO9AB2RTY4 2548 aa10.82□□□□□ -0.68
CIITA-213ENST00000618327 A6NDX4 124 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 HLA-DMBP28068 263 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 C14orf178Q8N769 122 aaPredicted RBP10.81□□□□□ -0.68
CIITA-213ENST00000618327 AJUBAQ96IF1 538 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 ZC2HC1AQ96GY0 325 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 LY6LH3BQJ8 138 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 VCYO14598 125 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 PAX4O43316 350 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 DEFB136Q30KP8 78 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 FAM167A-AS1Q96KT0 104 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 CHCHD5Q9BSY4 110 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 SPANXA1Q9NS26 97 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 JPT2Q9H910 190 aa10.81□□□□□ -0.68
CIITA-213ENST00000618327 TRGV4A0A0C4DH28 118 aa10.8□□□□□ -0.68
CIITA-213ENST00000618327 TRAV8-3A0A0A6YYJ7 113 aa10.8□□□□□ -0.68
CIITA-213ENST00000618327 ADARB2-AS1A8MUL3 147 aa10.8□□□□□ -0.68
CIITA-213ENST00000618327 S100A7L2Q5SY68 101 aa10.8□□□□□ -0.68
CIITA-213ENST00000618327 SMKR1H3BMG3 65 aa10.8□□□□□ -0.68
CIITA-213ENST00000618327 DEFB104AQ8WTQ1 72 aa10.8□□□□□ -0.68
CIITA-213ENST00000618327 ARHGAP32A7KAX9 2087 aa10.8□□□□□ -0.68
CIITA-213ENST00000618327 PRRC2CQ9Y520 2896 aaKnown RBP10.79□□□□□ -0.68
CIITA-213ENST00000618327 LTAP01374 205 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 PHLDA1Q8WV24 401 aaPredicted RBP10.79□□□□□ -0.68
CIITA-213ENST00000618327 KLF12Q9Y4X4 402 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 TSSC4Q9Y5U2 329 aaPredicted RBP10.79□□□□□ -0.68
CIITA-213ENST00000618327 TRGV1A0A0A0MS02 117 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 TEX43Q6ZNM6 134 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 BUB3O43684 328 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 WI2-2373I1.2A0A1W2PRP0 233 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 K7EN84 100 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 XCL2Q9UBD3 114 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 ABCA2Q9BZC7 2435 aa10.79□□□□□ -0.68
CIITA-213ENST00000618327 TMEM213A2RRL7 107 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 USP9YO00507 2555 aaPredicted RBP10.78□□□□□ -0.68
CIITA-213ENST00000618327 SLAQ13239 276 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 ASPHD1Q5U4P2 390 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 IGHV3-73A0A0B4J1V6 119 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 PRSS46E5RG02 174 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 K7EP13 123 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 IGHV4-31P0DP07 118 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 WFDC11Q8NEX6 87 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 CSTL1Q9H114 145 aa10.78□□□□□ -0.68
CIITA-213ENST00000618327 SMIM27A0A1W2PRY6 76 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms