RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 PTTG2Q9NZH5 202 aa10.61□□□□□ -0.71
SHKBP1-228ENST00000602239 C9JCJ5 164 aa10.6□□□□□ -0.71
SHKBP1-228ENST00000602239 HMGB3O15347 200 aaKnown RBP10.6□□□□□ -0.71
SHKBP1-228ENST00000602239 TYMSP04818 313 aa10.6□□□□□ -0.71
SHKBP1-228ENST00000602239 CRYGDP07320 174 aa10.6□□□□□ -0.71
SHKBP1-228ENST00000602239 GNG5P63218 68 aa10.6□□□□□ -0.71
SHKBP1-228ENST00000602239 SGK494Q96LW2 274 aa10.6□□□□□ -0.71
SHKBP1-228ENST00000602239 TXNDC17Q9BRA2 123 aa10.6□□□□□ -0.71
SHKBP1-228ENST00000602239 TRAV21A0A0B4J279 112 aa10.59□□□□□ -0.71
SHKBP1-228ENST00000602239 K7EP13 123 aa10.59□□□□□ -0.71
SHKBP1-228ENST00000602239 SSNA1O43805 119 aa10.59□□□□□ -0.71
SHKBP1-228ENST00000602239 SMR3BP02814 79 aaPredicted RBP10.59□□□□□ -0.71
SHKBP1-228ENST00000602239 INAFM2P0DMQ5 153 aa10.59□□□□□ -0.71
SHKBP1-228ENST00000602239 RAB2AP61019 212 aa10.59□□□□□ -0.71
SHKBP1-228ENST00000602239 TREM1Q9NP99 234 aa10.59□□□□□ -0.71
SHKBP1-228ENST00000602239 SRRM2Q9UQ35 2752 aaKnown RBP10.58□□□□□ -0.72
SHKBP1-228ENST00000602239 GATA1P15976 413 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-228ENST00000602239 ACOT6Q3I5F7 207 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-228ENST00000602239 NHLRC2Q8NBF2 726 aa10.58□□□□□ -0.72
SHKBP1-228ENST00000602239 C11orf21Q9P2W6 132 aa10.58□□□□□ -0.72
SHKBP1-228ENST00000602239 HERC1Q15751 4861 aa10.58□□□□□ -0.72
SHKBP1-228ENST00000602239 A0A1W2PPV4 95 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 PET100P0DJ07 73 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 GCSHP23434 173 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 HAMPP81172 84 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 FAM74A1Q5RGS3 127 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 Q5VSD8 79 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 DPPA3Q6W0C5 159 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 PQLC2Q6ZP29 291 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 SDF2L1Q9HCN8 221 aa10.57□□□□□ -0.72
SHKBP1-228ENST00000602239 IGHV3-38A0A0C4DH36 116 aa10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 LRCOL1A6NCL2 159 aa10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 ZNF80P51504 273 aaPredicted RBP10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 ARL6IP6Q8N6S5 226 aa10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 SLC25A29Q8N8R3 303 aa10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 OR10G9Q8NGN4 311 aa10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 OR10G7Q8NGN6 311 aa10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 ASB13Q8WXK3 278 aa10.56□□□□□ -0.72
SHKBP1-228ENST00000602239 ZNF876PQ49A33 203 aa10.55□□□□□ -0.72
SHKBP1-228ENST00000602239 C10orf126Q8N4M7 172 aa10.55□□□□□ -0.72
SHKBP1-228ENST00000602239 KCNS1Q96KK3 526 aa10.55□□□□□ -0.72
SHKBP1-228ENST00000602239 DMBT1Q9UGM3 2413 aaPredicted RBP10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 IGHV3-73A0A0B4J1V6 119 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 IBA57-AS1B1ANH7 110 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 ARL14EPLP0DKL9 152 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 PPT1P50897 306 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 TIRAPP58753 221 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 LINC01556Q5JQF7 62 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 CFAP126Q5VTH2 177 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 SH2D6Q7Z4S9 175 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 TMEM75Q8N9X5 138 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 FRZBQ92765 325 aa10.54□□□□□ -0.72
SHKBP1-228ENST00000602239 FBLL1A6NHQ2 334 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-228ENST00000602239 A6NHS1 94 aa10.53□□□□□ -0.72
SHKBP1-228ENST00000602239 RS1O15537 224 aa10.53□□□□□ -0.72
SHKBP1-228ENST00000602239 Q9HAA7 133 aa10.53□□□□□ -0.72
SHKBP1-228ENST00000602239 FLG2Q5D862 2391 aaPredicted RBP10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 PGPEP1LA6NFU8 196 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 PSCAO43653 123 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 IGLV2-11P01706 119 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 IGHV3-30P01768 117 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 IGHV3-33P01772 117 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 TCRAP04437 139 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 PFN1P07737 140 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 IGHV3-30-3P0DP02 117 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 IGHV3-30-5P0DP03 117 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 PSG8Q9UQ74 426 aa10.52□□□□□ -0.73
SHKBP1-228ENST00000602239 IGLV5-52A0A0A0MRZ9 124 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 TRBV6-4A0A1B0GX49 114 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 GCGP01275 180 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 STAG3L2P0CL84 134 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 STAG3L3P0CL85 134 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 CDC34P49427 236 aaPredicted RBP10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 OR10J3Q5JRS4 329 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 HSD17B11Q8NBQ5 300 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 SUN5Q8TC36 379 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 RAB24Q969Q5 203 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 C9orf85Q96MD7 179 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 PRADC1Q9BSG0 188 aa10.51□□□□□ -0.73
SHKBP1-228ENST00000602239 TRAV8-6A0A0B4J262 113 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 TAAR5O14804 337 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 RNASE3P12724 160 aaKnown RBP10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 GCHFRP30047 84 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 DEFA1P59665 94 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 DEFA3P59666 94 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 SUMO1P63165 101 aaKnown RBP10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 ZNF506Q5JVG8 444 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 Q6ZSN1 163 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 Q8N3U1 123 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 C5orf17Q8NAS9 161 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 NDFIP1Q9BT67 221 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 FAM30AQ9NZY2 134 aa10.5□□□□□ -0.73
SHKBP1-228ENST00000602239 RHOHQ15669 191 aa10.49□□□□□ -0.73
SHKBP1-228ENST00000602239 LELP1Q5T871 98 aa10.49□□□□□ -0.73
SHKBP1-228ENST00000602239 PRNTQ86SH4 94 aa10.49□□□□□ -0.73
SHKBP1-228ENST00000602239 Q8N814 137 aa10.49□□□□□ -0.73
SHKBP1-228ENST00000602239 LINC00479Q96M42 142 aa10.49□□□□□ -0.73
SHKBP1-228ENST00000602239 Q9UF83 564 aa10.49□□□□□ -0.73
SHKBP1-228ENST00000602239 EPDR1Q9UM22 224 aa10.49□□□□□ -0.73
SHKBP1-228ENST00000602239 SERTM2A0A1B0GWG4 89 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 230.1 ms