RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 RAB5CP51148 216 aa11.35□□□□□ -0.59
LSM4-206ENST00000600289 MUC21Q5SSG8 566 aa11.35□□□□□ -0.59
LSM4-206ENST00000600289 SGK494Q96LW2 274 aa11.35□□□□□ -0.59
LSM4-206ENST00000600289 FAT2Q9NYQ8 4349 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 IFNA7P01567 189 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 ZFP69Q49AA0 526 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 SMUG1Q53HV7 270 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 SLC51BQ86UW2 128 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 SFT2D1Q8WV19 159 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 KCNS1Q96KK3 526 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 SPXQ9BT56 116 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 NACAE9PAV3 2078 aa11.34□□□□□ -0.59
LSM4-206ENST00000600289 DNAH2Q9P225 4427 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 TRGV1A0A0A0MS02 117 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 TRBV6-1A0A0K0K1D8 114 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 H3BNG1 76 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 PFN1P07737 140 aaKnown RBP11.33□□□□□ -0.6
LSM4-206ENST00000600289 H2AFB1P0C5Y9 115 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 HOXA5P20719 270 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 RNF212Q495C1 297 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 COX8CQ7Z4L0 72 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 PRNTQ86SH4 94 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 Q86TA4 180 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 POM121L12Q8N7R1 296 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 C8orf49Q96NF6 230 aa11.33□□□□□ -0.6
LSM4-206ENST00000600289 hCG_2014768A0A024R1R8 64 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 TRAV1-1A0A0B4J248 108 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 GCGP01275 180 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 ZNF80P51504 273 aaPredicted RBP11.32□□□□□ -0.6
LSM4-206ENST00000600289 TMEM183BQ1AE95 376 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 TMEM183AQ8IXX5 376 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 C9orf62Q8N4C0 152 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 FMC1Q96HJ9 113 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 LINC00479Q96M42 142 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 SDF2L1Q9HCN8 221 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 MDFICQ9P1T7 246 aa11.32□□□□□ -0.6
LSM4-206ENST00000600289 TRGV2A0A075B6R0 118 aa11.31□□□□□ -0.6
LSM4-206ENST00000600289 IGHV3-16A0A0C4DH30 117 aa11.31□□□□□ -0.6
LSM4-206ENST00000600289 TYMSP04818 313 aa11.31□□□□□ -0.6
LSM4-206ENST00000600289 SULT1A2P50226 295 aa11.31□□□□□ -0.6
LSM4-206ENST00000600289 RASL10AQ92737 203 aa11.31□□□□□ -0.6
LSM4-206ENST00000600289 NAGKQ9UJ70 344 aa11.31□□□□□ -0.6
LSM4-206ENST00000600289 ZFP30Q9Y2G7 519 aa11.31□□□□□ -0.6
LSM4-206ENST00000600289 TRAV34A0A0B4J273 112 aa11.3□□□□□ -0.6
LSM4-206ENST00000600289 PAGE4O60829 102 aa11.3□□□□□ -0.6
LSM4-206ENST00000600289 FAM3BP58499 235 aaPredicted RBP11.3□□□□□ -0.6
LSM4-206ENST00000600289 CST9LP1Q5W188 147 aa11.3□□□□□ -0.6
LSM4-206ENST00000600289 MRPL16Q9NX20 251 aaKnown RBP11.3□□□□□ -0.6
LSM4-206ENST00000600289 C11orf21Q9P2W6 132 aa11.3□□□□□ -0.6
LSM4-206ENST00000600289 TRAV26-1A0A087WT03 109 aa11.29□□□□□ -0.6
LSM4-206ENST00000600289 MED14OSP0DP75 135 aa11.29□□□□□ -0.6
LSM4-206ENST00000600289 OR5I1Q13606 314 aa11.29□□□□□ -0.6
LSM4-206ENST00000600289 MANBALQ9NQG1 85 aa11.29□□□□□ -0.6
LSM4-206ENST00000600289 DNAH11Q96DT5 4516 aa11.29□□□□□ -0.6
LSM4-206ENST00000600289 GNRH2O43555 120 aa11.28□□□□□ -0.6
LSM4-206ENST00000600289 LTAP01374 205 aa11.28□□□□□ -0.6
LSM4-206ENST00000600289 S100A9P06702 114 aaKnown RBP11.28□□□□□ -0.6
LSM4-206ENST00000600289 UBE2G1P62253 170 aa11.28□□□□□ -0.6
LSM4-206ENST00000600289 DNAH17Q9UFH2 4485 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 FABP5P3A8MUU1 101 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 TEX46H3BTG2 121 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 M0R2P5 195 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 SLAQ13239 276 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 UBE2DNLQ8IWF7 75 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 PTH2Q96A98 100 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 TXNDC17Q9BRA2 123 aa11.27□□□□□ -0.61
LSM4-206ENST00000600289 A0A1B0GV50 99 aa11.26□□□□□ -0.61
LSM4-206ENST00000600289 NUDT3O95989 172 aa11.26□□□□□ -0.61
LSM4-206ENST00000600289 AKR1C3P42330 323 aa11.26□□□□□ -0.61
LSM4-206ENST00000600289 VSIG2Q96IQ7 327 aa11.26□□□□□ -0.61
LSM4-206ENST00000600289 C9orf85Q96MD7 179 aa11.26□□□□□ -0.61
LSM4-206ENST00000600289 HSPG2P98160 4391 aa11.26□□□□□ -0.61
LSM4-206ENST00000600289 TRAV4A0A0B4J268 109 aa11.25□□□□□ -0.61
LSM4-206ENST00000600289 A0A1B0GVG6 124 aa11.25□□□□□ -0.61
LSM4-206ENST00000600289 CCL20P78556 96 aa11.25□□□□□ -0.61
LSM4-206ENST00000600289 C11orf52Q96A22 123 aa11.25□□□□□ -0.61
LSM4-206ENST00000600289 ZC2HC1AQ96GY0 325 aa11.25□□□□□ -0.61
LSM4-206ENST00000600289 PRO0255Q9UI72 69 aa11.25□□□□□ -0.61
LSM4-206ENST00000600289 IGKV3D-20A0A0C4DH25 116 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 A0A0J9YY99 117 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 SCO2A0A1W2PP80 73 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 CRIP1P50238 77 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 CCL18P55774 89 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 FHL2Q14192 279 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 ZNF674Q2M3X9 581 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 DNLZQ5SXM8 178 aa11.24□□□□□ -0.61
LSM4-206ENST00000600289 PKD1P98161 4303 aa11.23□□□□□ -0.61
LSM4-206ENST00000600289 RNASE3P12724 160 aaKnown RBP11.23□□□□□ -0.61
LSM4-206ENST00000600289 CRYBA4P53673 196 aa11.23□□□□□ -0.61
LSM4-206ENST00000600289 PIK3CD-AS1Q5SR53 167 aa11.23□□□□□ -0.61
LSM4-206ENST00000600289 FAM162BQ5T6X4 162 aa11.23□□□□□ -0.61
LSM4-206ENST00000600289 GNG13Q9P2W3 67 aa11.23□□□□□ -0.61
LSM4-206ENST00000600289 A0A096LPF7 62 aa11.22□□□□□ -0.61
LSM4-206ENST00000600289 CIDEAO60543 219 aa11.22□□□□□ -0.61
LSM4-206ENST00000600289 SH2D1AO60880 128 aa11.22□□□□□ -0.61
LSM4-206ENST00000600289 IGHV3-53P01767 116 aa11.22□□□□□ -0.61
LSM4-206ENST00000600289 ZNF479Q96JC4 524 aa11.22□□□□□ -0.61
LSM4-206ENST00000600289 MLST8Q9BVC4 326 aa11.22□□□□□ -0.61
LSM4-206ENST00000600289 HHLA3Q9XRX5 114 aa11.22□□□□□ -0.61
LSM4-206ENST00000600289 LINC00588Q9Y4M8 146 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms