RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 GNRH2O43555 120 aa10.82□□□□□ -0.68
VRK3-221ENST00000600284 GIPP09681 153 aaPredicted RBP10.82□□□□□ -0.68
VRK3-221ENST00000600284 SFTA3P0C7M3 94 aa10.82□□□□□ -0.68
VRK3-221ENST00000600284 ATP6V0CP27449 155 aa10.82□□□□□ -0.68
VRK3-221ENST00000600284 GNG5P63218 68 aa10.82□□□□□ -0.68
VRK3-221ENST00000600284 SDF2L1Q9HCN8 221 aa10.82□□□□□ -0.68
VRK3-221ENST00000600284 K7EP13 123 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 K7EQD1 137 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 CXorf1O96002 111 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 TCRAP04437 139 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 GCHFRP30047 84 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 SRIP30626 198 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 LINC00315P59091 139 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 SPATA12Q7Z6I5 190 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 INO80EQ8NBZ0 244 aaPredicted RBP10.81□□□□□ -0.68
VRK3-221ENST00000600284 OR4C5Q8NGB2 326 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 PCNPQ8WW12 178 aaKnown RBP10.81□□□□□ -0.68
VRK3-221ENST00000600284 TMEM167BQ9NRX6 74 aa10.81□□□□□ -0.68
VRK3-221ENST00000600284 LRP1BQ9NZR2 4599 aa10.8□□□□□ -0.68
VRK3-221ENST00000600284 TRAV9-2A0A087WT02 112 aa10.8□□□□□ -0.68
VRK3-221ENST00000600284 FBLL1A6NHQ2 334 aaKnown RBP10.8□□□□□ -0.68
VRK3-221ENST00000600284 F6UZH7 168 aa10.8□□□□□ -0.68
VRK3-221ENST00000600284 TYMSP04818 313 aa10.8□□□□□ -0.68
VRK3-221ENST00000600284 TXNDC17Q9BRA2 123 aa10.8□□□□□ -0.68
VRK3-221ENST00000600284 ACTR3CQ9C0K3 210 aaPredicted RBP10.8□□□□□ -0.68
VRK3-221ENST00000600284 C9JCJ5 164 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 TAAR5O14804 337 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 CIDEAO60543 219 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 GYPEP15421 78 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 SUMO1P63165 101 aaKnown RBP10.79□□□□□ -0.68
VRK3-221ENST00000600284 Q5BKY6 102 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 Q6ZRN7 208 aaPredicted RBP10.79□□□□□ -0.68
VRK3-221ENST00000600284 SH2D6Q7Z4S9 175 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 NFE4Q86UQ8 179 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 EPDR1Q9UM22 224 aa10.79□□□□□ -0.68
VRK3-221ENST00000600284 BORCS7-ASMTA0A0B4J1R7 106 aa10.78□□□□□ -0.68
VRK3-221ENST00000600284 SGK494Q96LW2 274 aa10.78□□□□□ -0.68
VRK3-221ENST00000600284 PSG8Q9UQ74 426 aa10.78□□□□□ -0.68
VRK3-221ENST00000600284 LY96Q9Y6Y9 160 aa10.78□□□□□ -0.68
VRK3-221ENST00000600284 ABCA13Q86UQ4 5058 aa10.78□□□□□ -0.68
VRK3-221ENST00000600284 A0A1W2PRE2 83 aa10.77□□□□□ -0.69
VRK3-221ENST00000600284 IGLV2-11P01706 119 aa10.77□□□□□ -0.69
VRK3-221ENST00000600284 PFN1P07737 140 aaKnown RBP10.77□□□□□ -0.69
VRK3-221ENST00000600284 FLI1Q01543 452 aaPredicted RBP10.77□□□□□ -0.69
VRK3-221ENST00000600284 SAPCD1Q5SSQ6 148 aa10.77□□□□□ -0.69
VRK3-221ENST00000600284 CYB561D1Q8N8Q1 229 aa10.77□□□□□ -0.69
VRK3-221ENST00000600284 TMEM75Q8N9X5 138 aa10.77□□□□□ -0.69
VRK3-221ENST00000600284 PTH2Q96A98 100 aa10.77□□□□□ -0.69
VRK3-221ENST00000600284 SH3BGRL3Q9H299 93 aa10.77□□□□□ -0.69
VRK3-221ENST00000600284 RNF222A6NCQ9 220 aa10.76□□□□□ -0.69
VRK3-221ENST00000600284 GGTLC3B5MD39 225 aa10.76□□□□□ -0.69
VRK3-221ENST00000600284 GCGP01275 180 aa10.76□□□□□ -0.69
VRK3-221ENST00000600284 GATA1P15976 413 aaPredicted RBP10.76□□□□□ -0.69
VRK3-221ENST00000600284 ZNF80P51504 273 aaPredicted RBP10.76□□□□□ -0.69
VRK3-221ENST00000600284 ZFP69Q49AA0 526 aa10.76□□□□□ -0.69
VRK3-221ENST00000600284 SMUG1Q53HV7 270 aa10.76□□□□□ -0.69
VRK3-221ENST00000600284 RPL7L1Q6DKI1 246 aaKnown RBP10.76□□□□□ -0.69
VRK3-221ENST00000600284 HSPG2P98160 4391 aa10.76□□□□□ -0.69
VRK3-221ENST00000600284 DNAH5Q8TE73 4624 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 FXYD6-FXYD2A0A087WZ82 144 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 EVI2AP22794 236 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 TIRAPP58753 221 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 KRTAP10-2P60368 255 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 ZNF876PQ49A33 203 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 PGPEP1Q9NXJ5 209 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 C11orf21Q9P2W6 132 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 BOLA1Q9Y3E2 137 aa10.75□□□□□ -0.69
VRK3-221ENST00000600284 CTXND1A0A1B0GTU2 59 aa10.74□□□□□ -0.69
VRK3-221ENST00000600284 EREGO14944 169 aa10.74□□□□□ -0.69
VRK3-221ENST00000600284 RS1O15537 224 aa10.74□□□□□ -0.69
VRK3-221ENST00000600284 DNAH10OSP0CZ25 163 aa10.74□□□□□ -0.69
VRK3-221ENST00000600284 PRNTQ86SH4 94 aa10.74□□□□□ -0.69
VRK3-221ENST00000600284 OR2T35Q8NGX2 323 aa10.74□□□□□ -0.69
VRK3-221ENST00000600284 C9orf85Q96MD7 179 aa10.74□□□□□ -0.69
VRK3-221ENST00000600284 NKX6-2Q9C056 277 aaPredicted RBP10.74□□□□□ -0.69
VRK3-221ENST00000600284 ERVFC1-1P60608 527 aa10.73□□□□□ -0.69
VRK3-221ENST00000600284 CFAP126Q5VTH2 177 aa10.73□□□□□ -0.69
VRK3-221ENST00000600284 WFDC10BQ8IUB3 73 aa10.73□□□□□ -0.69
VRK3-221ENST00000600284 C10orf126Q8N4M7 172 aa10.73□□□□□ -0.69
VRK3-221ENST00000600284 TRBV6-4A0A1B0GX49 114 aa10.72□□□□□ -0.69
VRK3-221ENST00000600284 PPT1P50897 306 aa10.72□□□□□ -0.69
VRK3-221ENST00000600284 ZNF726P1Q15940 193 aa10.72□□□□□ -0.69
VRK3-221ENST00000600284 MAPKAPK5-AS1Q8N8E1 139 aa10.72□□□□□ -0.69
VRK3-221ENST00000600284 PRADC1Q9BSG0 188 aa10.72□□□□□ -0.69
VRK3-221ENST00000600284 MSRB1Q9NZV6 116 aa10.72□□□□□ -0.69
VRK3-221ENST00000600284 TNFRSF18Q9Y5U5 241 aa10.72□□□□□ -0.69
VRK3-221ENST00000600284 LOC100131303A0A0U1RQF7 123 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 IFNA7P01567 189 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 RNASE3P12724 160 aaKnown RBP10.71□□□□□ -0.69
VRK3-221ENST00000600284 RHOHQ15669 191 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 RGS21Q2M5E4 152 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 PIK3CD-AS1Q5SR53 167 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 AKR1C8PQ5T2L2 129 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 CDPF1Q6NVV7 123 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 SLC25A29Q8N8R3 303 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 NHLRC2Q8NBF2 726 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 HIST1H2BAQ96A08 127 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 KRTAP4-5Q9BYR2 181 aa10.71□□□□□ -0.69
VRK3-221ENST00000600284 PGPEP1LA6NFU8 196 aa10.7□□□□□ -0.7
VRK3-221ENST00000600284 FABP5P3A8MUU1 101 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms