RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TRGV2A0A075B6R0 118 aa11.25□□□□□ -0.61
TRIM28-213ENST00000598355 IGHV3-16A0A0C4DH30 117 aa11.25□□□□□ -0.61
TRIM28-213ENST00000598355 TYMSP04818 313 aa11.25□□□□□ -0.61
TRIM28-213ENST00000598355 PFN1P07737 140 aaKnown RBP11.25□□□□□ -0.61
TRIM28-213ENST00000598355 FAM3BP58499 235 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-213ENST00000598355 SAPCD1Q5SSQ6 148 aa11.25□□□□□ -0.61
TRIM28-213ENST00000598355 RASL10AQ92737 203 aa11.25□□□□□ -0.61
TRIM28-213ENST00000598355 KCNS1Q96KK3 526 aa11.25□□□□□ -0.61
TRIM28-213ENST00000598355 LINC00479Q96M42 142 aa11.25□□□□□ -0.61
TRIM28-213ENST00000598355 MRPL16Q9NX20 251 aaKnown RBP11.25□□□□□ -0.61
TRIM28-213ENST00000598355 TRAV26-1A0A087WT03 109 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 TRBV6-1A0A0K0K1D8 114 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 GCGP01275 180 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 IFNA7P01567 189 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 ZFP69Q49AA0 526 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 SMUG1Q53HV7 270 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 PRNTQ86SH4 94 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 AKAP14Q86UN6 197 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 SDF2L1Q9HCN8 221 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 DNAH10Q8IVF4 4471 aa11.24□□□□□ -0.61
TRIM28-213ENST00000598355 TRAV34A0A0B4J273 112 aa11.23□□□□□ -0.61
TRIM28-213ENST00000598355 PPT1P50897 306 aa11.23□□□□□ -0.61
TRIM28-213ENST00000598355 SFT2D1Q8WV19 159 aa11.23□□□□□ -0.61
TRIM28-213ENST00000598355 VSIG2Q96IQ7 327 aa11.23□□□□□ -0.61
TRIM28-213ENST00000598355 NAGKQ9UJ70 344 aa11.23□□□□□ -0.61
TRIM28-213ENST00000598355 TRAV1-1A0A0B4J248 108 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 GNRH2O43555 120 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 PAGE4O60829 102 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 H2AFB1P0C5Y9 115 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 RAB5CP51148 216 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 OR5I1Q13606 314 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 Q6ZR54 194 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 FMC1Q96HJ9 113 aa11.22□□□□□ -0.61
TRIM28-213ENST00000598355 hCG_2014768A0A024R1R8 64 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 M0R2P5 195 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 NUDT3O95989 172 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 SULT1A2P50226 295 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 EIF5AL1Q6IS14 154 aaKnown RBP11.21□□□□□ -0.61
TRIM28-213ENST00000598355 SLC51BQ86UW2 128 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 UBE2DNLQ8IWF7 75 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 C9orf62Q8N4C0 152 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 C9orf85Q96MD7 179 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 ZFP30Q9Y2G7 519 aa11.21□□□□□ -0.61
TRIM28-213ENST00000598355 A0A0J9YY99 117 aa11.2□□□□□ -0.62
TRIM28-213ENST00000598355 LTAP01374 205 aa11.2□□□□□ -0.62
TRIM28-213ENST00000598355 FHL2Q14192 279 aa11.2□□□□□ -0.62
TRIM28-213ENST00000598355 CST9LP1Q5W188 147 aa11.2□□□□□ -0.62
TRIM28-213ENST00000598355 ZNRF2Q8NHG8 242 aa11.2□□□□□ -0.62
TRIM28-213ENST00000598355 IGKV3D-20A0A0C4DH25 116 aa11.19□□□□□ -0.62
TRIM28-213ENST00000598355 RNASE3P12724 160 aaKnown RBP11.19□□□□□ -0.62
TRIM28-213ENST00000598355 PTH2Q96A98 100 aa11.19□□□□□ -0.62
TRIM28-213ENST00000598355 ZC2HC1AQ96GY0 325 aa11.19□□□□□ -0.62
TRIM28-213ENST00000598355 PRO0255Q9UI72 69 aa11.19□□□□□ -0.62
TRIM28-213ENST00000598355 LINC00588Q9Y4M8 146 aa11.19□□□□□ -0.62
TRIM28-213ENST00000598355 HECTD4Q9Y4D8 3996 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 A0A096LPF7 62 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 TRAV4A0A0B4J268 109 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 CRIP1P50238 77 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 CRYBA4P53673 196 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 SLAQ13239 276 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 ZNF479Q96JC4 524 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 UPK3BQ9BT76 320 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 MANBALQ9NQG1 85 aa11.18□□□□□ -0.62
TRIM28-213ENST00000598355 A0A1B0GV50 99 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 SCO2A0A1W2PP80 73 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 FABP5P3A8MUU1 101 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 IGHV3-53P01767 116 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 AKR1C3P42330 323 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 CCL18P55774 89 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 UBE2G1P62253 170 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 DNLZQ5SXM8 178 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 C11orf52Q96A22 123 aa11.17□□□□□ -0.62
TRIM28-213ENST00000598355 A0A1B0GVG6 124 aa11.16□□□□□ -0.62
TRIM28-213ENST00000598355 SFTA3P0C7M3 94 aa11.16□□□□□ -0.62
TRIM28-213ENST00000598355 CCL20P78556 96 aa11.16□□□□□ -0.62
TRIM28-213ENST00000598355 ZNF674Q2M3X9 581 aa11.16□□□□□ -0.62
TRIM28-213ENST00000598355 DNAH2Q9P225 4427 aa11.16□□□□□ -0.62
TRIM28-213ENST00000598355 FAT2Q9NYQ8 4349 aa11.16□□□□□ -0.62
TRIM28-213ENST00000598355 PAX4O43316 350 aa11.15□□□□□ -0.62
TRIM28-213ENST00000598355 SH2D1AO60880 128 aa11.15□□□□□ -0.62
TRIM28-213ENST00000598355 S100A9P06702 114 aaKnown RBP11.15□□□□□ -0.62
TRIM28-213ENST00000598355 PIK3CD-AS1Q5SR53 167 aa11.15□□□□□ -0.62
TRIM28-213ENST00000598355 ZNF575Q86XF7 245 aa11.15□□□□□ -0.62
TRIM28-213ENST00000598355 TXNDC17Q9BRA2 123 aa11.15□□□□□ -0.62
TRIM28-213ENST00000598355 MLST8Q9BVC4 326 aa11.15□□□□□ -0.62
TRIM28-213ENST00000598355 HHLA3Q9XRX5 114 aa11.15□□□□□ -0.62
TRIM28-213ENST00000598355 MRPS16Q9Y3D3 137 aaKnown RBP11.15□□□□□ -0.62
TRIM28-213ENST00000598355 BIRC6Q9NR09 4857 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 IGLV2-18A0A075B6J9 118 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 RTL8CO15255 209 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 ESRGQ1W209 222 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 LINC01559Q495D7 138 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 FAM162BQ5T6X4 162 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 IL36BQ9NZH7 164 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 ICOSQ9Y6W8 199 aa11.14□□□□□ -0.63
TRIM28-213ENST00000598355 KRBOX1C9JBD0 128 aa11.13□□□□□ -0.63
TRIM28-213ENST00000598355 ZNF876PQ49A33 203 aa11.13□□□□□ -0.63
TRIM28-213ENST00000598355 ZNF506Q5JVG8 444 aa11.13□□□□□ -0.63
TRIM28-213ENST00000598355 LINC00336Q6ZUF6 198 aa11.13□□□□□ -0.63
TRIM28-213ENST00000598355 GNG13Q9P2W3 67 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms