RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 EPDR1Q9UM22 224 aa10.5□□□□□ -0.73
TRIM28-205ENST00000595028 PSG8Q9UQ74 426 aa10.5□□□□□ -0.73
TRIM28-205ENST00000595028 MAP1LC3B2A6NCE7 125 aa10.49□□□□□ -0.73
TRIM28-205ENST00000595028 RTL8CO15255 209 aa10.49□□□□□ -0.73
TRIM28-205ENST00000595028 IGHV3-53P01767 116 aa10.49□□□□□ -0.73
TRIM28-205ENST00000595028 FGF8P55075 233 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-205ENST00000595028 FLI1Q01543 452 aaPredicted RBP10.49□□□□□ -0.73
TRIM28-205ENST00000595028 C8orf49Q96NF6 230 aa10.49□□□□□ -0.73
TRIM28-205ENST00000595028 SPXQ9BT56 116 aa10.49□□□□□ -0.73
TRIM28-205ENST00000595028 MAP1LC3BQ9GZQ8 125 aa10.49□□□□□ -0.73
TRIM28-205ENST00000595028 IGHV3-16A0A0C4DH30 117 aa10.48□□□□□ -0.73
TRIM28-205ENST00000595028 A0A1B0GVY2 172 aa10.48□□□□□ -0.73
TRIM28-205ENST00000595028 FBLL1A6NHQ2 334 aaKnown RBP10.48□□□□□ -0.73
TRIM28-205ENST00000595028 TYMSP04818 313 aa10.48□□□□□ -0.73
TRIM28-205ENST00000595028 UBE2G2P60604 165 aa10.48□□□□□ -0.73
TRIM28-205ENST00000595028 SDF2L1Q9HCN8 221 aa10.48□□□□□ -0.73
TRIM28-205ENST00000595028 A0A0D9SG52 128 aa10.47□□□□□ -0.73
TRIM28-205ENST00000595028 BCL2L11O43521 198 aa10.47□□□□□ -0.73
TRIM28-205ENST00000595028 GCGP01275 180 aa10.47□□□□□ -0.73
TRIM28-205ENST00000595028 ZNF80P51504 273 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-205ENST00000595028 ZFP69Q49AA0 526 aa10.47□□□□□ -0.73
TRIM28-205ENST00000595028 PRNTQ86SH4 94 aa10.47□□□□□ -0.73
TRIM28-205ENST00000595028 RASL10AQ92737 203 aa10.47□□□□□ -0.73
TRIM28-205ENST00000595028 KCNS1Q96KK3 526 aa10.47□□□□□ -0.73
TRIM28-205ENST00000595028 A0A096LPF7 62 aa10.46□□□□□ -0.73
TRIM28-205ENST00000595028 NBDYA0A0U1RRE5 68 aa10.46□□□□□ -0.73
TRIM28-205ENST00000595028 KANTRA0A1W2PQU2 76 aa10.46□□□□□ -0.73
TRIM28-205ENST00000595028 FAM74A7A6NL05 159 aa10.46□□□□□ -0.73
TRIM28-205ENST00000595028 GNRH2O43555 120 aa10.46□□□□□ -0.73
TRIM28-205ENST00000595028 IFNA7P01567 189 aa10.46□□□□□ -0.73
TRIM28-205ENST00000595028 PFN1P07737 140 aaKnown RBP10.46□□□□□ -0.73
TRIM28-205ENST00000595028 FHITP49789 147 aa10.46□□□□□ -0.73
TRIM28-205ENST00000595028 ZNF471Q9BX82 626 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-205ENST00000595028 NKX6-2Q9C056 277 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-205ENST00000595028 PRSS29PA6NIE9 313 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 M0R2P5 195 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 PEX7O00628 323 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 SEC11BP0C7V7 166 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 PPT1P50897 306 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 SLAQ13239 276 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 FHL2Q14192 279 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 ESRGQ1W209 222 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 SMUG1Q53HV7 270 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 SOHLH1Q5JUK2 328 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 SAPCD1Q5SSQ6 148 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 Q86TA4 180 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 UPK3BQ9BT76 320 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 C11orf21Q9P2W6 132 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 PRO0255Q9UI72 69 aa10.45□□□□□ -0.74
TRIM28-205ENST00000595028 MRPS16Q9Y3D3 137 aaKnown RBP10.45□□□□□ -0.74
TRIM28-205ENST00000595028 TRAV34A0A0B4J273 112 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 A0A1B0GVG6 124 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 PAX4O43316 350 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 SFTA3P0C7M3 94 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 CRYBA4P53673 196 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 C1orf134Q5TEV5 83 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 STOML3Q8TAV4 291 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 HIST1H2BAQ96A08 127 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 ZNF479Q96JC4 524 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 LINC00479Q96M42 142 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 ICOSQ9Y6W8 199 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 ARL2-SNX15V9GYD0 113 aa10.44□□□□□ -0.74
TRIM28-205ENST00000595028 TRAV4A0A0B4J268 109 aa10.43□□□□□ -0.74
TRIM28-205ENST00000595028 UMAD1C9J7I0 102 aa10.43□□□□□ -0.74
TRIM28-205ENST00000595028 FAM213BQ8TBF2 198 aa10.43□□□□□ -0.74
TRIM28-205ENST00000595028 HHLA3Q9XRX5 114 aa10.43□□□□□ -0.74
TRIM28-205ENST00000595028 TRGV4A0A0C4DH28 118 aa10.42□□□□□ -0.74
TRIM28-205ENST00000595028 PFDN1O60925 122 aa10.42□□□□□ -0.74
TRIM28-205ENST00000595028 EIF5AP63241 154 aaKnown RBP10.42□□□□□ -0.74
TRIM28-205ENST00000595028 TMUB2Q71RG4 321 aa10.42□□□□□ -0.74
TRIM28-205ENST00000595028 TCEAL7Q9BRU2 100 aa10.42□□□□□ -0.74
TRIM28-205ENST00000595028 Q9H8V8 135 aa10.42□□□□□ -0.74
TRIM28-205ENST00000595028 TPT1P13693 172 aaKnown RBP10.41□□□□□ -0.74
TRIM28-205ENST00000595028 TTC32Q5I0X7 151 aa10.41□□□□□ -0.74
TRIM28-205ENST00000595028 DPPA3Q6W0C5 159 aa10.41□□□□□ -0.74
TRIM28-205ENST00000595028 AKAP14Q86UN6 197 aa10.41□□□□□ -0.74
TRIM28-205ENST00000595028 OR4C5Q8NGB2 326 aa10.41□□□□□ -0.74
TRIM28-205ENST00000595028 SFT2D1Q8WV19 159 aa10.41□□□□□ -0.74
TRIM28-205ENST00000595028 MBD3L1Q8WWY6 194 aa10.41□□□□□ -0.74
TRIM28-205ENST00000595028 C9orf85Q96MD7 179 aa10.41□□□□□ -0.74
TRIM28-205ENST00000595028 MRPL23Q16540 153 aaKnown RBP10.4□□□□□ -0.74
TRIM28-205ENST00000595028 CST9LP1Q5W188 147 aa10.4□□□□□ -0.74
TRIM28-205ENST00000595028 TCTE3Q8IZS6 198 aa10.4□□□□□ -0.74
TRIM28-205ENST00000595028 C6orf223Q8N319 242 aa10.4□□□□□ -0.74
TRIM28-205ENST00000595028 FMC1Q96HJ9 113 aa10.4□□□□□ -0.74
TRIM28-205ENST00000595028 KRTAP1-5Q9BYS1 174 aa10.4□□□□□ -0.74
TRIM28-205ENST00000595028 UBE2G1P62253 170 aa10.39□□□□□ -0.75
TRIM28-205ENST00000595028 COX8CQ7Z4L0 72 aa10.39□□□□□ -0.75
TRIM28-205ENST00000595028 PCNPQ8WW12 178 aaKnown RBP10.39□□□□□ -0.75
TRIM28-205ENST00000595028 ZC2HC1AQ96GY0 325 aa10.39□□□□□ -0.75
TRIM28-205ENST00000595028 IGKV3D-20A0A0C4DH25 116 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 TRBV6-1A0A0K0K1D8 114 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 A0A1B0GV50 99 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 A0A1W2PPQ1 181 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 C9JCJ5 164 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 K7EQD1 137 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 PAGE4O60829 102 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 ORM1P02763 201 aa10.38□□□□□ -0.75
TRIM28-205ENST00000595028 RNASE3P12724 160 aaKnown RBP10.38□□□□□ -0.75
TRIM28-205ENST00000595028 GYPEP15421 78 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms