RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 SMUG1Q53HV7 270 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 TVP23CQ96ET8 276 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 VSIG2Q96IQ7 327 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 TCEAL7Q9BRU2 100 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 MAP1LC3BQ9GZQ8 125 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 ICOSQ9Y6W8 199 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 UMAD1C9J7I0 102 aa12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 M0R2P5 195 aa12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 RTL8CO15255 209 aa12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 PAX4O43316 350 aa12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 IFNA7P01567 189 aa12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 HIST1H2BAQ96A08 127 aa12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 MRPS16Q9Y3D3 137 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 MUC4Q99102 2169 aa12.32□□□□□ -0.44
SHKBP1-204ENST00000594862 TRGV4A0A0C4DH28 118 aa12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 IGHV3-16A0A0C4DH30 117 aa12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 KANTRA0A1W2PQU2 76 aa12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 GCGP01275 180 aa12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 PFN1P07737 140 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 PRNTQ86SH4 94 aa12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 HHLA3Q9XRX5 114 aa12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 ARL2-SNX15V9GYD0 113 aa12.31□□□□□ -0.44
SHKBP1-204ENST00000594862 A0A096LPF7 62 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 SMLR1H3BR10 107 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 BCL2L11O43521 198 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 IGLV2-11P01706 119 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 IGHV3-53P01767 116 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 TYMSP04818 313 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 SEC11BP0C7V7 166 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 SGK494Q96LW2 274 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 Q9H8V8 135 aa12.3□□□□□ -0.44
SHKBP1-204ENST00000594862 TRAV4A0A0B4J268 109 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 A0A1W2PPQ1 181 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 FAM74A7A6NL05 159 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 PEX7O00628 323 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 ORM1P02763 201 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 BTF3P20290 206 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 FHITP49789 147 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 CRYBA4P53673 196 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 UBE2G2P60604 165 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 FHL2Q14192 279 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 MRPL23Q16540 153 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 ESRGQ1W209 222 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 DPPA3Q6W0C5 159 aa12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 PCNPQ8WW12 178 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-204ENST00000594862 GNRH2O43555 120 aa12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 CIDEAO60543 219 aa12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 FGF8P55075 233 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 C6orf223Q8N319 242 aa12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 OR4C5Q8NGB2 326 aa12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 C8orf49Q96NF6 230 aa12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 ZNF471Q9BX82 626 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 PCLOQ9Y6V0 5065 aa12.28□□□□□ -0.44
SHKBP1-204ENST00000594862 PFDN1O60925 122 aa12.27□□□□□ -0.45
SHKBP1-204ENST00000594862 A0A1B0GVY2 172 aa12.26□□□□□ -0.45
SHKBP1-204ENST00000594862 C9JCJ5 164 aa12.26□□□□□ -0.45
SHKBP1-204ENST00000594862 ZNF80P51504 273 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-204ENST00000594862 Q86TA4 180 aa12.26□□□□□ -0.45
SHKBP1-204ENST00000594862 FMC1Q96HJ9 113 aa12.26□□□□□ -0.45
SHKBP1-204ENST00000594862 ZNF479Q96JC4 524 aa12.26□□□□□ -0.45
SHKBP1-204ENST00000594862 ZFP30Q9Y2G7 519 aa12.26□□□□□ -0.45
SHKBP1-204ENST00000594862 TPT1P13693 172 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 SRIP30626 198 aa12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 UBE2G1P62253 170 aa12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 NEGR1Q7Z3B1 354 aa12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 SH2D6Q7Z4S9 175 aa12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 OR11H4Q8NGC9 324 aa12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 PTH2Q96A98 100 aa12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 TXNDC17Q9BRA2 123 aa12.25□□□□□ -0.45
SHKBP1-204ENST00000594862 KIAA1109Q2LD37 5005 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 FABP5P3A8MUU1 101 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 SFTA3P0C7M3 94 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 LGALSLQ3ZCW2 172 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 ZNF876PQ49A33 203 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 CST9LP1Q5W188 147 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 EIF5AL1Q6IS14 154 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 FAM213BQ8TBF2 198 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 MBD3L1Q8WWY6 194 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 C9orf85Q96MD7 179 aa12.24□□□□□ -0.45
SHKBP1-204ENST00000594862 TRAV34A0A0B4J273 112 aa12.23□□□□□ -0.45
SHKBP1-204ENST00000594862 TRBV6-1A0A0K0K1D8 114 aa12.23□□□□□ -0.45
SHKBP1-204ENST00000594862 COX8CQ7Z4L0 72 aa12.23□□□□□ -0.45
SHKBP1-204ENST00000594862 SFT2D1Q8WV19 159 aa12.23□□□□□ -0.45
SHKBP1-204ENST00000594862 LINC00479Q96M42 142 aa12.23□□□□□ -0.45
SHKBP1-204ENST00000594862 C11orf21Q9P2W6 132 aa12.23□□□□□ -0.45
SHKBP1-204ENST00000594862 SIVA1O15304 175 aa12.22□□□□□ -0.45
SHKBP1-204ENST00000594862 S100A9P06702 114 aaKnown RBP12.22□□□□□ -0.45
SHKBP1-204ENST00000594862 PIK3CD-AS1Q5SR53 167 aa12.22□□□□□ -0.45
SHKBP1-204ENST00000594862 TMUB2Q71RG4 321 aa12.22□□□□□ -0.45
SHKBP1-204ENST00000594862 K7EQD1 137 aa12.21□□□□□ -0.45
SHKBP1-204ENST00000594862 GYPEP15421 78 aa12.21□□□□□ -0.45
SHKBP1-204ENST00000594862 S100A4P26447 101 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-204ENST00000594862 ASIPP42127 132 aa12.21□□□□□ -0.45
SHKBP1-204ENST00000594862 AKR1C3P42330 323 aa12.21□□□□□ -0.45
SHKBP1-204ENST00000594862 BOLA1Q9Y3E2 137 aa12.21□□□□□ -0.45
SHKBP1-204ENST00000594862 K7EP13 123 aa12.2□□□□□ -0.46
SHKBP1-204ENST00000594862 NXPH4O95158 308 aa12.2□□□□□ -0.46
SHKBP1-204ENST00000594862 H2AFB1P0C5Y9 115 aa12.2□□□□□ -0.46
SHKBP1-204ENST00000594862 GATA1P15976 413 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-204ENST00000594862 RAB5CP51148 216 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms