RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 NAGKQ9UJ70 344 aa6.81□□□□□ -1.32
CCDC40-214ENST00000575431 HUWE1Q7Z6Z7 4374 aaKnown RBP6.81□□□□□ -1.32
CCDC40-214ENST00000575431 NBEAL2Q6ZNJ1 2754 aa6.8□□□□□ -1.32
CCDC40-214ENST00000575431 RBFOX3A6NFN3 312 aa6.8□□□□□ -1.32
CCDC40-214ENST00000575431 SPINK4O60575 86 aa6.8□□□□□ -1.32
CCDC40-214ENST00000575431 ZNF80P51504 273 aaPredicted RBP6.8□□□□□ -1.32
CCDC40-214ENST00000575431 FAM162BQ5T6X4 162 aa6.8□□□□□ -1.32
CCDC40-214ENST00000575431 MED9Q9NWA0 146 aa6.8□□□□□ -1.32
CCDC40-214ENST00000575431 STAB2Q8WWQ8 2551 aa6.8□□□□□ -1.32
CCDC40-214ENST00000575431 TMEM250H0YL14 139 aa6.79□□□□□ -1.32
CCDC40-214ENST00000575431 RPL35P42766 123 aaKnown RBP6.79□□□□□ -1.32
CCDC40-214ENST00000575431 ZNF674Q2M3X9 581 aa6.79□□□□□ -1.32
CCDC40-214ENST00000575431 Q6ZQT7 251 aa6.79□□□□□ -1.32
CCDC40-214ENST00000575431 ZNF767PQ75MW2 155 aa6.79□□□□□ -1.32
CCDC40-214ENST00000575431 MLST8Q9BVC4 326 aa6.79□□□□□ -1.32
CCDC40-214ENST00000575431 BIN3Q9NQY0 253 aa6.79□□□□□ -1.32
CCDC40-214ENST00000575431 TRGV2A0A075B6R0 118 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 TRGV1A0A0A0MS02 117 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 IGHV3-16A0A0C4DH30 117 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 IGLL5B9A064 214 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 GNRH2O43555 120 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 TYMSP04818 313 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 ZNF506Q5JVG8 444 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 RASL10AQ92737 203 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 PTH2Q96A98 100 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 ZC2HC1AQ96GY0 325 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 FAM210AQ96ND0 272 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 NDUFAF3Q9BU61 184 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 EIF5A2Q9GZV4 153 aaKnown RBP6.78□□□□□ -1.32
CCDC40-214ENST00000575431 MDFICQ9P1T7 246 aa6.78□□□□□ -1.32
CCDC40-214ENST00000575431 GAGE12BA1L429 117 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 M0R2P5 195 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 SH2D1AO60880 128 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 GAGE7O76087 117 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 ORM1P02763 201 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 GAGE12FP0CL80 117 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 GAGE12GP0CL81 117 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 GAGE12IP0CL82 117 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 GNG4P50150 75 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 CRIP1P50238 77 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 RAB14P61106 215 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 CENPWQ5EE01 88 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 DNLZQ5SXM8 178 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 Q6ZTI0 123 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 SMDT1Q9H4I9 107 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 C11orf21Q9P2W6 132 aa6.77□□□□□ -1.33
CCDC40-214ENST00000575431 IGHV4-4A0A075B6R2 117 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 IGKV3D-20A0A0C4DH25 116 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 B4DEV8 164 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 C9JCJ5 164 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 F5H768 121 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 CIDEAO60543 219 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 CXCL1P09341 107 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 HTN3P15516 51 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 S100A4P26447 101 aaKnown RBP6.76□□□□□ -1.33
CCDC40-214ENST00000575431 ASIPP42127 132 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 SLAQ13239 276 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 LINC01559Q495D7 138 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 TOR2AQ5JU69 321 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 PIK3CD-AS1Q5SR53 167 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 C15orf53Q8NAA6 179 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 DERL1Q9BUN8 251 aa6.76□□□□□ -1.33
CCDC40-214ENST00000575431 RAB19A4D1S5 217 aa6.75□□□□□ -1.33
CCDC40-214ENST00000575431 KRBOX1C9JBD0 128 aa6.75□□□□□ -1.33
CCDC40-214ENST00000575431 H3BNG1 76 aa6.75□□□□□ -1.33
CCDC40-214ENST00000575431 NHLRC2Q8NBF2 726 aa6.75□□□□□ -1.33
CCDC40-214ENST00000575431 DAZAP1Q96EP5 407 aaKnown RBP6.75□□□□□ -1.33
CCDC40-214ENST00000575431 C9orf85Q96MD7 179 aa6.75□□□□□ -1.33
CCDC40-214ENST00000575431 MRPL16Q9NX20 251 aaKnown RBP6.75□□□□□ -1.33
CCDC40-214ENST00000575431 IL36BQ9NZH7 164 aa6.75□□□□□ -1.33
CCDC40-214ENST00000575431 APLNQ9ULZ1 77 aa6.75□□□□□ -1.33
CCDC40-214ENST00000575431 LCE6AA0A183 80 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 M0R036 132 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 MED14OSP0DP75 135 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 MGST1P10620 155 aaKnown RBP6.74□□□□□ -1.33
CCDC40-214ENST00000575431 RPS20P60866 119 aaKnown RBP6.74□□□□□ -1.33
CCDC40-214ENST00000575431 OR5I1Q13606 314 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 PEA15Q15121 130 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 ZNF876PQ49A33 203 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 LGALS9CQ6DKI2 356 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 PRR27Q6MZM9 219 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 SYT8Q8NBV8 401 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 PARLQ9H300 379 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 LY96Q9Y6Y9 160 aa6.74□□□□□ -1.33
CCDC40-214ENST00000575431 TRBV20OR9-2A0A075B6H5 130 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 TRAV4A0A0B4J268 109 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 XKRY2A2RUG3 117 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 IGLV2-8P01709 118 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 SRP19P09132 144 aaKnown RBP6.73□□□□□ -1.33
CCDC40-214ENST00000575431 ARMS2P0C7Q2 107 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 P0DMU3 169 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 FAM231AP0DMU4 169 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 FAM231CP0DMU5 169 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 RNASE3P12724 160 aaKnown RBP6.73□□□□□ -1.33
CCDC40-214ENST00000575431 FAM74A3Q4VXF1 159 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 TMEM88Q6PEY1 159 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 OR4C5Q8NGB2 326 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 PRO0255Q9UI72 69 aa6.73□□□□□ -1.33
CCDC40-214ENST00000575431 TRGV4A0A0C4DH28 118 aa6.72□□□□□ -1.33
CCDC40-214ENST00000575431 ZNF727A8MUV8 499 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms